BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0849 (402 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46 SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5) 27 5.7 SB_34851| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7 SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64) 27 5.7 SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13) 27 7.6 SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6 SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23) 26 10.0 SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 26 10.0 SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0 SB_29999| Best HMM Match : RmlD_sub_bind (HMM E-Value=5.6e-11) 26 10.0 >SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 134 Score = 30.7 bits (66), Expect = 0.46 Identities = 20/58 (34%), Positives = 29/58 (50%) Frame = -3 Query: 328 PRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRNILIKTKNSEIYLSVGLNRPIP 155 PR D T+ R ++ P +P++ PC A + L K+ LSVGL +PIP Sbjct: 30 PRNDTA-TSMSRCDTTVQ--PLLPSISIPCGLAPNGHDLNKSSKKNTPLSVGLTQPIP 84 >SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5) Length = 380 Score = 27.1 bits (57), Expect = 5.7 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +3 Query: 69 IRFTKTHK*ILQNATKPSYLTYSLYKKDAG 158 +R K +L+ +KPSY++ ++ KD G Sbjct: 214 VRLVTDEKKLLKLTSKPSYVSRKIFNKDCG 243 >SB_34851| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 103 Score = 27.1 bits (57), Expect = 5.7 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -2 Query: 368 VWVAQLAVKGLAVAS-TRSYAYRAPKKTG*HRTEP 267 VW AVK L + S T SYA+R P G TEP Sbjct: 40 VWKELEAVKDLLLKSETYSYAFREPLGGGKKPTEP 74 >SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64) Length = 325 Score = 27.1 bits (57), Expect = 5.7 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = -3 Query: 337 SLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRNILIKTKNSEI 188 SL R+ HTA+ + E++ V LRD I A +N L TK++E+ Sbjct: 13 SLAAARESAHTAKMKWYQTFEEHAEVIRLRDASI-ASLQNTL-GTKDAEL 60 >SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13) Length = 470 Score = 26.6 bits (56), Expect = 7.6 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Frame = -3 Query: 367 SGLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNL-RDPCI----CADTRNILIKT 203 SG+ S S +RDP+HT++ + I + ++ +PC+ C D +K Sbjct: 72 SGVTSCENSTSRFDKRDPIHTSQSNKNLRIPSDSDSLDIYLEPCVLTPTCVDDLYSTLKD 131 Query: 202 KNSEIYLSVGLNRPIPASFL 143 + ++++ + P S L Sbjct: 132 EQTDVFTFQKVETTYPESEL 151 >SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 325 Score = 26.6 bits (56), Expect = 7.6 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +3 Query: 69 IRFTKTHK*ILQNATKPSYLTYSLYKKD 152 +R K +L+ A+KPSY++ ++ KD Sbjct: 81 VRLVTDEKKLLKLASKPSYMSSKIFNKD 108 >SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23) Length = 432 Score = 26.2 bits (55), Expect = 10.0 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 255 LGTCGFCSMLSGLLRRAVCIGSRRGNS 335 L CG+C + GLL RA+C R NS Sbjct: 401 LAICGYCLSVHGLL-RALCHCGIRANS 426 >SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79) Length = 701 Score = 26.2 bits (55), Expect = 10.0 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +3 Query: 69 IRFTKTHK*ILQNATKPSYLTYSLYKKD 152 +R K +L+ A+KPSY++ ++ KD Sbjct: 539 VRLVTDEKKLLKLASKPSYVSSKIFNKD 566 >SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 997 Score = 26.2 bits (55), Expect = 10.0 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 380 DFHWVWVAQLAVKGLAVASTRSYAYRAPKK 291 D HW+++A L + L + S RS A R KK Sbjct: 813 DAHWMFLASLFSQILKLPSGRSIALRNEKK 842 >SB_29999| Best HMM Match : RmlD_sub_bind (HMM E-Value=5.6e-11) Length = 185 Score = 26.2 bits (55), Expect = 10.0 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -3 Query: 313 MHTARRRRPDNIEQNPHVPNLRDPCICADTRNILIKTKNSEIYLSVGLNRP 161 +H A RRPD +E +P V + T L KT S L+ GL++P Sbjct: 68 IHAAAERRPDVVENDPSVTEK----LNIGTTQFLAKTIES---LNYGLSKP 111 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,294,709 Number of Sequences: 59808 Number of extensions: 266752 Number of successful extensions: 597 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 566 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 597 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 715479706 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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