Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0849
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.46 
SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)           27   5.7  
SB_34851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)                   27   5.7  
SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13)                   27   7.6  
SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 26   10.0 
SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)               26   10.0 
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_29999| Best HMM Match : RmlD_sub_bind (HMM E-Value=5.6e-11)         26   10.0 

>SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -3

Query: 328 PRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRNILIKTKNSEIYLSVGLNRPIP 155
           PR D   T+  R    ++  P +P++  PC  A   + L K+      LSVGL +PIP
Sbjct: 30  PRNDTA-TSMSRCDTTVQ--PLLPSISIPCGLAPNGHDLNKSSKKNTPLSVGLTQPIP 84


>SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)
          Length = 380

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 69  IRFTKTHK*ILQNATKPSYLTYSLYKKDAG 158
           +R     K +L+  +KPSY++  ++ KD G
Sbjct: 214 VRLVTDEKKLLKLTSKPSYVSRKIFNKDCG 243


>SB_34851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 368 VWVAQLAVKGLAVAS-TRSYAYRAPKKTG*HRTEP 267
           VW    AVK L + S T SYA+R P   G   TEP
Sbjct: 40  VWKELEAVKDLLLKSETYSYAFREPLGGGKKPTEP 74


>SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)
          Length = 325

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -3

Query: 337 SLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRNILIKTKNSEI 188
           SL   R+  HTA+ +     E++  V  LRD  I A  +N L  TK++E+
Sbjct: 13  SLAAARESAHTAKMKWYQTFEEHAEVIRLRDASI-ASLQNTL-GTKDAEL 60


>SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13)
          Length = 470

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = -3

Query: 367 SGLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNL-RDPCI----CADTRNILIKT 203
           SG+ S     S   +RDP+HT++  +   I  +    ++  +PC+    C D     +K 
Sbjct: 72  SGVTSCENSTSRFDKRDPIHTSQSNKNLRIPSDSDSLDIYLEPCVLTPTCVDDLYSTLKD 131

Query: 202 KNSEIYLSVGLNRPIPASFL 143
           + ++++    +    P S L
Sbjct: 132 EQTDVFTFQKVETTYPESEL 151


>SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 69  IRFTKTHK*ILQNATKPSYLTYSLYKKD 152
           +R     K +L+ A+KPSY++  ++ KD
Sbjct: 81  VRLVTDEKKLLKLASKPSYMSSKIFNKD 108


>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 432

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 255 LGTCGFCSMLSGLLRRAVCIGSRRGNS 335
           L  CG+C  + GLL RA+C    R NS
Sbjct: 401 LAICGYCLSVHGLL-RALCHCGIRANS 426


>SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 701

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 69  IRFTKTHK*ILQNATKPSYLTYSLYKKD 152
           +R     K +L+ A+KPSY++  ++ KD
Sbjct: 539 VRLVTDEKKLLKLASKPSYVSSKIFNKD 566


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 380 DFHWVWVAQLAVKGLAVASTRSYAYRAPKK 291
           D HW+++A L  + L + S RS A R  KK
Sbjct: 813 DAHWMFLASLFSQILKLPSGRSIALRNEKK 842


>SB_29999| Best HMM Match : RmlD_sub_bind (HMM E-Value=5.6e-11)
          Length = 185

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 313 MHTARRRRPDNIEQNPHVPNLRDPCICADTRNILIKTKNSEIYLSVGLNRP 161
           +H A  RRPD +E +P V       +   T   L KT  S   L+ GL++P
Sbjct: 68  IHAAAERRPDVVENDPSVTEK----LNIGTTQFLAKTIES---LNYGLSKP 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,709
Number of Sequences: 59808
Number of extensions: 266752
Number of successful extensions: 597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)