Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0849
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    26   8.8  
AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical ...    26   8.8  

>Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical
           protein T05D4.4 protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 370 GSGLPSSR*KDSLLPRRDPMHTARRR----RPDNIEQNPHVPNLRDP 242
           GSG  + R  D L   R  +HT R R    +P   E NP  P+ RDP
Sbjct: 547 GSGDDTFRAFDGLSDSRGLVHTPRSRSPFTKPGLWEPNPADPHSRDP 593


>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 355 SSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNLRDP 242
           S R  D+  PRR P   ARRR+ D++        + +P
Sbjct: 199 SRRDSDNSPPRRRPSSPARRRKDDDLSPPRKSRKIEEP 236


>AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical
           protein Y63D3A.10 protein.
          Length = 277

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 166 GSVQPRDKSRSF*FLLKYSVYLRKCKDHV 252
           G++  ++ S +F FL+ Y + +R C +HV
Sbjct: 80  GTLSKQEPSDAFVFLIAYKLDIRDCINHV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,743,179
Number of Sequences: 27780
Number of extensions: 198911
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)