Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0849
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   2.3  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   2.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   9.2  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 189 ISEFLVFIKIFRVSAQMQGSRRLGTCGFCSMLSGL 293
           IS  L+   I  +S+     + +GTCG   ++ GL
Sbjct: 28  ISYALILFNILHMSSAEGWFKAIGTCGSHIIIVGL 62


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 68  NKIY*NS*INFAKCHEAKLPDI*FI 142
           NKIY     N AKC +   PD+ F+
Sbjct: 124 NKIY-----NLAKCVQESAPDVWFV 143


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 68  NKIY*NS*INFAKCHEAKLPDI*FI 142
           NKIY     N AKC +   PD+ F+
Sbjct: 124 NKIY-----NLAKCVQESAPDVWFV 143


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 104 LQNLFMSFSKSYSVVVIN 51
           +   +M+FSK YSV V++
Sbjct: 293 VNEFYMAFSKLYSVSVVS 310


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +3

Query: 54  NNHHRIRFTKTHK*ILQNATKPSYLTYSLYKKDAGMGRF 170
           +N  R+R+ +T   ++ + +  SYL   L + D  + ++
Sbjct: 275 HNDGRLRYWRTPSVVVSDYSDYSYLDEKLERNDLDLEKY 313


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 111 TKPSYLTYSLYKKDAGMGR 167
           T PS  T   Y KDA +GR
Sbjct: 178 TTPSICTALGYLKDAWIGR 196


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 111 TKPSYLTYSLYKKDAGMGR 167
           T PS  T   Y KDA +GR
Sbjct: 173 TTPSICTALGYLKDAWIGR 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,990
Number of Sequences: 438
Number of extensions: 2471
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)