Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0849
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19090.1 68415.m02229 expressed protein contains Pfam profile...    27   3.5  
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    27   6.2  
At4g23270.1 68417.m03354 protein kinase family protein contains ...    27   6.2  
At1g74000.1 68414.m08570 strictosidine synthase family protein s...    27   6.2  

>At2g19090.1 68415.m02229 expressed protein contains Pfam profiles:
           PF04782 protein of unknown function (DUF632), PF04783
           protein of unknown function (DUF630); expression
           supported by MPSS
          Length = 814

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 23/112 (20%), Positives = 44/112 (39%)
 Frame = +3

Query: 63  HRIRFTKTHK*ILQNATKPSYLTYSLYKKDAGMGRFSPTER*ISEFLVFIKIFRVSAQMQ 242
           HR +F   H   + +  K S   +    +      F PT   + +      + R+  + +
Sbjct: 30  HRTKFASGHIAYIHSLRKVSDALHDFILQGDNNNEFVPT---LCQDSFVTPVKRMPQRRR 86

Query: 243 GSRRLGTCGFCSMLSGLLRRAVCIGSRRGNSESFYRELGNPDPVKIEERSSD 398
            S R  +  F S+    +   +  G  R N ++ Y       PV++E+RS +
Sbjct: 87  RSSRSNSGEFISISPSSIPPKMIQGRPRSNVKANYLMANRSRPVRVEQRSPE 138


>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
           domain-containing protein / HNH endonuclease
           domain-containing protein similar to HepA-related
           protein HARP [Homo sapiens] GI:6693791; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain, PF01844: HNH
           endonuclease
          Length = 1190

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 146 FI*TICQVTWLRGILQNLFMSFSKSYSVVVIN 51
           F  T C+V  +RGI   +F  FSK   ++ +N
Sbjct: 386 FAKTYCEVGLVRGIQGKIFQDFSKGTRLLELN 417


>At4g23270.1 68417.m03354 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 645

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 339 TRCCLDAILCIPRAEEDRITSNRTRMFLIYVILAFAQ 229
           TRC   A+LC+    EDR T +     L   ++A A+
Sbjct: 571 TRCIHIALLCVQEDAEDRPTMSSIVQMLTTSLIALAE 607


>At1g74000.1 68414.m08570 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088
          Length = 328

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 315 GSRRGNSESFYRELGNPDPVK 377
           GS+ G SE F   + NPD +K
Sbjct: 234 GSKAGTSEDFTNSVSNPDNIK 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,155,522
Number of Sequences: 28952
Number of extensions: 181606
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)