Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0847
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 115  EGITSCSKNQTRKIIISVITGGRTSCESARVGTTAPPIS 231
            +G T+  ++  R     +IT G T+   +  GTTA P+S
Sbjct: 1651 DGTTAVPRSMDRTTAAPMITDGTTAAPMSTDGTTAVPMS 1689



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 115  EGITSCSKNQTRKIIISVITGGRTSCESARVGTTAPPISAVKQ*CVSV*RVGQPL 279
            +G T    +  R   + + TGG T+   +  GT A P+S      V + R+ Q L
Sbjct: 1212 QGTTVSPMSMDRTTAVPISTGGTTTAPRSTDGTAAAPMSTDGTTAVPIIRMEQLL 1266


>SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -2

Query: 284 SHNGCPTLQTETHYCFT---AEIGGAVVPTRADSQEVLPP 174
           SH  C   +TE+  CFT    E      PT+ +S   L P
Sbjct: 32  SHRVCTPTKTESQSCFTPTKTESQSCFTPTKTESPSCLHP 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,111,027
Number of Sequences: 59808
Number of extensions: 338152
Number of successful extensions: 683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)