Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0847
         (468 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217994-1|AAG17236.1|  353|Homo sapiens unknown protein.              33   0.65 
AY320566-1|AAQ21877.1|   77|Homo sapiens immunoglobulin kappa ch...    31   2.6  
AJ236549-1|CAB43010.1|  107|Homo sapiens anti-HCV E2 antibody, V...    29   6.1  

>AF217994-1|AAG17236.1|  353|Homo sapiens unknown protein.
          Length = 353

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 408 KKKKKNSRGGPVPNS 452
           KKKKKNSRGGPVP +
Sbjct: 46  KKKKKNSRGGPVPGN 60


>AY320566-1|AAQ21877.1|   77|Homo sapiens immunoglobulin kappa chain
           variable region protein.
          Length = 77

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 254 RFEGWGSRCDYTETLELISQGVWRIYVVDVYG 349
           RF GWGS  D+T T+  +    + +Y    YG
Sbjct: 40  RFSGWGSGTDFTLTISRLEPEDFAVYYCQQYG 71


>AJ236549-1|CAB43010.1|  107|Homo sapiens anti-HCV E2 antibody, VK
           segment protein.
          Length = 107

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 254 RFEGWGSRCDYTETLELISQGVWRIYVVDVYGLQ*PLNTRWAVSSST 394
           RF G GS  D+T T+  +    + +Y   +YG     N+RW     T
Sbjct: 61  RFSGSGSGTDFTLTISRLEPEDFAVYYCQLYG-----NSRWTFGQGT 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,776,200
Number of Sequences: 237096
Number of extensions: 1605177
Number of successful extensions: 4472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4471
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)