Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0847
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   2.9  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   2.9  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z82060-4|CAB04885.2|  434|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 458 IGRIGYRAPPRVFFFFFY 405
           IG  G+ APP VF FFF+
Sbjct: 348 IGAFGHEAPPLVFKFFFW 365


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 458 IGRIGYRAPPRVFFFFFY 405
           IG  G+ APP VF FFF+
Sbjct: 346 IGAFGHEAPPLVFKFFFW 363


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 293 TLELISQGVWRIYVVDVYGLQ*PLNTRW 376
           +++LI   V RI+   VYG++ P+N  W
Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSW 245


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 467 RLTIGRIGYRAPPRVFFFFFYCLDVWTSSQPTW 369
           R  IG++GYR    +F  F+    ++ S++P W
Sbjct: 360 RRKIGKLGYRRKEELFLVFYM---IFNSNKPLW 389


>Z82060-4|CAB04885.2|  434|Caenorhabditis elegans Hypothetical
           protein T27F6.6 protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +1

Query: 7   RC-IRIERCSGV--RIPQAGTNFSNEIRTQQMFTID---FHGEGITSCSKNQTRKI-IIS 165
           RC +++E C     +IP    N+S+ +  +  FTID    H + + +   N+   I  I 
Sbjct: 293 RCNVKLEECEITLNQIPGEDLNYSDHVGLRARFTIDDRFRHEKSVNTWEPNRPLLIEAIG 352

Query: 166 VITGGRTSCESARV 207
           ++ GG     + R+
Sbjct: 353 LVAGGERRARTDRI 366


>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
           protein R06F6.6 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 284 SHNGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITEIIILRV 144
           S +  PT    T +    +I  A  PT ADS  + PP   E II ++
Sbjct: 211 SSDSTPTPTQATQFDMPTQIQTASPPTTADS-AIFPPTSPESIIQKI 256


>AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical
           protein Y7A5A.1 protein.
          Length = 538

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 6   PVHSYRAMQRCSNPAGGYQF 65
           P H+ RAM++ +   GGY F
Sbjct: 459 PTHAMRAMEKFTRDVGGYSF 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,650,900
Number of Sequences: 27780
Number of extensions: 236018
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)