BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0847 (468 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 28 2.9 U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 28 2.9 U00063-3|AAK18959.2| 446|Caenorhabditis elegans Hypothetical pr... 27 5.1 Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 27 6.7 Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical pr... 27 6.7 Z46794-6|CAA86776.1| 416|Caenorhabditis elegans Hypothetical pr... 27 8.9 AL034489-1|CAA22461.1| 538|Caenorhabditis elegans Hypothetical ... 27 8.9 >U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily assigned gene nameprotein 24, isoform b protein. Length = 408 Score = 28.3 bits (60), Expect = 2.9 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 458 IGRIGYRAPPRVFFFFFY 405 IG G+ APP VF FFF+ Sbjct: 348 IGAFGHEAPPLVFKFFFW 365 >U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily assigned gene nameprotein 24, isoform a protein. Length = 406 Score = 28.3 bits (60), Expect = 2.9 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 458 IGRIGYRAPPRVFFFFFY 405 IG G+ APP VF FFF+ Sbjct: 346 IGAFGHEAPPLVFKFFFW 363 >U00063-3|AAK18959.2| 446|Caenorhabditis elegans Hypothetical protein F56C9.3 protein. Length = 446 Score = 27.5 bits (58), Expect = 5.1 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 293 TLELISQGVWRIYVVDVYGLQ*PLNTRW 376 +++LI V RI+ VYG++ P+N W Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSW 245 >Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical protein ZC15.5 protein. Length = 597 Score = 27.1 bits (57), Expect = 6.7 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -2 Query: 467 RLTIGRIGYRAPPRVFFFFFYCLDVWTSSQPTW 369 R IG++GYR +F F+ ++ S++P W Sbjct: 360 RRKIGKLGYRRKEELFLVFYM---IFNSNKPLW 389 >Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical protein T27F6.6 protein. Length = 434 Score = 27.1 bits (57), Expect = 6.7 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%) Frame = +1 Query: 7 RC-IRIERCSGV--RIPQAGTNFSNEIRTQQMFTID---FHGEGITSCSKNQTRKI-IIS 165 RC +++E C +IP N+S+ + + FTID H + + + N+ I I Sbjct: 293 RCNVKLEECEITLNQIPGEDLNYSDHVGLRARFTIDDRFRHEKSVNTWEPNRPLLIEAIG 352 Query: 166 VITGGRTSCESARV 207 ++ GG + R+ Sbjct: 353 LVAGGERRARTDRI 366 >Z46794-6|CAA86776.1| 416|Caenorhabditis elegans Hypothetical protein R06F6.6 protein. Length = 416 Score = 26.6 bits (56), Expect = 8.9 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -2 Query: 284 SHNGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITEIIILRV 144 S + PT T + +I A PT ADS + PP E II ++ Sbjct: 211 SSDSTPTPTQATQFDMPTQIQTASPPTTADS-AIFPPTSPESIIQKI 256 >AL034489-1|CAA22461.1| 538|Caenorhabditis elegans Hypothetical protein Y7A5A.1 protein. Length = 538 Score = 26.6 bits (56), Expect = 8.9 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 6 PVHSYRAMQRCSNPAGGYQF 65 P H+ RAM++ + GGY F Sbjct: 459 PTHAMRAMEKFTRDVGGYSF 478 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,650,900 Number of Sequences: 27780 Number of extensions: 236018 Number of successful extensions: 439 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 423 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 439 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 839684522 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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