BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0847 (468 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g14570.2 68418.m01709 transporter, putative similar to trans-... 29 1.2 At5g14570.1 68418.m01708 transporter, putative similar to trans-... 29 1.2 At4g38640.1 68417.m05469 choline transporter-related contains we... 28 2.7 At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 27 4.8 At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 27 4.8 At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 27 4.8 At3g04690.1 68416.m00503 protein kinase family protein contains ... 27 6.3 At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 27 6.3 At5g49870.1 68418.m06175 jacalin lectin family protein similar t... 27 8.4 >At5g14570.2 68418.m01709 transporter, putative similar to trans-membrane nitrate transporter protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058, high-affinity nitrate transporter ACH1 [Arabidopsis thaliana] GI:3608362; contains Pfam profile PF00083: Sugar (and other) transporter Length = 397 Score = 29.5 bits (63), Expect = 1.2 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -1 Query: 165 GNYNFAGLIFTARCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTAAS 25 GNY A ++ YS+ VE+ +++++ YF + G L + T A+ Sbjct: 266 GNYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311 >At5g14570.1 68418.m01708 transporter, putative similar to trans-membrane nitrate transporter protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058, high-affinity nitrate transporter ACH1 [Arabidopsis thaliana] GI:3608362; contains Pfam profile PF00083: Sugar (and other) transporter Length = 493 Score = 29.5 bits (63), Expect = 1.2 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -1 Query: 165 GNYNFAGLIFTARCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTAAS 25 GNY A ++ YS+ VE+ +++++ YF + G L + T A+ Sbjct: 266 GNYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311 >At4g38640.1 68417.m05469 choline transporter-related contains weak similarity to CD92 protein [Homo sapiens] gi|16945323|emb|CAC82175 Length = 556 Score = 28.3 bits (60), Expect = 2.7 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = -1 Query: 156 NFAGLIFTARCYS--FTVEVNREHLLSTYFIRKIGTRL 49 NFA + A C S T E+ R +LLS F+ + TR+ Sbjct: 418 NFAAITGEAYCTSAKMTYELLRRNLLSAVFVETVSTRI 455 >At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial identical to SP|P83484 ATP synthase beta chain 2, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; strong similarity to SP|P17614 ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana plumbaginifolia}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain; supporting cDNA gi|26452187|dbj|AK118582.1| Length = 556 Score = 27.5 bits (58), Expect = 4.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -2 Query: 230 EIGGAVVPTRADSQEVLPPVITEI 159 ++ GA+V R + QE LPP++T + Sbjct: 88 QVIGAIVDVRFEDQEGLPPIMTSL 111 >At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial, putative strong similarity to SP|P83483 ATP synthase beta chain 1, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}, SP|P17614 ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana plumbaginifolia}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 559 Score = 27.5 bits (58), Expect = 4.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -2 Query: 230 EIGGAVVPTRADSQEVLPPVITEI 159 ++ GA+V R + QE LPP++T + Sbjct: 91 QVIGAIVDVRFEDQEGLPPIMTSL 114 >At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial identical to SP|P83483 ATP synthase beta chain 1, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; strong similarity to SP|P17614 ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana plumbaginifolia}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain; supporting cDNA gi|26452102|dbj|AK118538.1| Length = 556 Score = 27.5 bits (58), Expect = 4.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -2 Query: 230 EIGGAVVPTRADSQEVLPPVITEI 159 ++ GA+V R + QE LPP++T + Sbjct: 88 QVIGAIVDVRFEDQEGLPPIMTSL 111 >At3g04690.1 68416.m00503 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 850 Score = 27.1 bits (57), Expect = 6.3 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -1 Query: 141 IFTARC-YSFTVEVNREHLLSTYFIRKIGTRLRDSNTAASLDTN 13 IFTA Y ++ ++ HLL YF T L SN+ +++ N Sbjct: 82 IFTAPATYEIPIKGDKRHLLRLYFYPSTYTGLNISNSYFTVEAN 125 >At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile PF01485:IBR domain Length = 384 Score = 27.1 bits (57), Expect = 6.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 64 FSNEIRTQQMFTIDFHGEGITSCSKNQTRKIIISVITGGRTSCESAR 204 F ++I MF ID G CS+ R I +S++ G +C S R Sbjct: 157 FDDDINADMMFYIDQCGHMF--CSECVKRHIEVSLLQGSLITCPSYR 201 >At5g49870.1 68418.m06175 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain Length = 601 Score = 26.6 bits (56), Expect = 8.4 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +1 Query: 4 VRCIRIERCSGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCSKNQTRKIIISVI---T 174 +RC+ I ++ + +N ++ F +D+ E ITS + ++ +I + Sbjct: 334 IRCLMINYEDAGKVVKRSHGLNNNDHQEEKFVVDYPNEFITSVVGTMSSSSVMPLIFKTS 393 Query: 175 GGRTS 189 GRTS Sbjct: 394 KGRTS 398 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,891,273 Number of Sequences: 28952 Number of extensions: 217309 Number of successful extensions: 406 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 406 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 791932800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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