Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0845
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   4.0  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    26   5.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   5.2  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 513 SGQVREPRSGPPPNVTRAIGLTP 581
           SG ++E  S  PPN+TRA    P
Sbjct: 110 SGALKEVSSNTPPNMTRAASQPP 132


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 1   VALHSRSLRTDYIK--AARARRSRSPQVRASVFHSLHQHYRDEPALLP 138
           V    RS R+D I+  A  ARR R   +   VF    + Y  +P LLP
Sbjct: 147 VVFIDRSRRSDAIQLFAKAARRMRKENISIWVFAEGTRSYSLKPCLLP 194


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = +2

Query: 395 FVKQRIA-----RGNIRYIWTSGRKCNFA 466
           ++KQR++      G IR IW  G+KC+ A
Sbjct: 147 YLKQRVSFIGDVPGEIRCIWRKGKKCHSA 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,272
Number of Sequences: 5004
Number of extensions: 59398
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)