Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0845
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0176 - 23329589-23331043 33 0.14
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 29 3.1
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859... 28 5.4
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 5.4
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 28 7.1
05_05_0335 - 24164714-24165574 27 9.4
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 27 9.4
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 27 9.4
>04_04_0176 - 23329589-23331043
Length = 484
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +2
Query: 434 IWTSGRKCNFAGC------DRGDLQPPNVNGWFWSGSG-AKIG-PTTQRNTGDWSYTGGY 589
+W + NF G + +Q PN NG + + G A+ G P RN GD G
Sbjct: 333 MWVGQQPWNFGGYGMPRHQQKPPMQQPNRNGDYGTVRGTARRGRPAGGRNEGDTGNANGN 392
Query: 590 GQAQPDNREAAQGND 634
+ PD R+ +G D
Sbjct: 393 ERGYPDRRQCGRGRD 407
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 151 NCCRQAKVPAHLCSVDEDCETRMRVLAENGYG 56
+CC Q KV L S +ED E +R + +GYG
Sbjct: 5 SCCNQQKVKRGLWSPEED-EKLIRYITTHGYG 35
>05_03_0667 +
16781857-16782001,16784506-16784544,16785229-16785910,
16786003-16786087,16786747-16786888,16787391-16787575,
16788011-16788143,16788317-16788405,16788530-16788604,
16789060-16789173,16789264-16789305
Length = 576
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 251 ARGVLHSYFFSWEHAPT-RSLEVDWLDARNICRRHCMDAVSLETPQENEFV 400
A G H S H + S++ D+LDA+++ R +D V+ P E +
Sbjct: 108 AEGFSHMLISSLRHLKSVESVQKDFLDAKHLAARLILDIVASIVPHEERIL 158
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 366 TASMQCLRQMFLASSQSTSKLRVGACSQLKKYECSTPRASRYVEW 232
+ +Q L+ S ST+ +R L+K EC PR +R + W
Sbjct: 527 SGGVQRLQSSPQESEYSTNFVRKIMTDSLQKLECEAPRETRPIRW 571
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 7 LHSRSLRTDYIKAARARRSRSPQVRASVFHSLHQHYR 117
L S+S+ Y K+ +ARR +P+ R + S+ H R
Sbjct: 502 LESQSMIDYYFKSGQARRDENPKFRNPKYLSMLNHLR 538
>05_05_0335 - 24164714-24165574
Length = 286
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 519 QVREPRSGPPPNVTRAIGLTPVATVKR 599
Q+ R GPPP AI PV T+ R
Sbjct: 140 QLGSSRQGPPPAPPSAIDAMPVVTISR 166
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 7 LHSRSLRTDYIKAARARRSRSPQVRASVFH 96
LH RS T + A+AR++ SP + FH
Sbjct: 111 LHQRSAETFNPQTAKARKAASPSPASKAFH 140
>03_05_0884 -
28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 39 QSSTRPP*PFSASTRIRVSQSSSTLQR*AGTFAWRQQFC 155
QS+ P P S S S S+ LQ +G + W ++C
Sbjct: 578 QSNQTPAKPVSTSLNTMESISAIALQAVSGPYMWNSEWC 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,785,951
Number of Sequences: 37544
Number of extensions: 474133
Number of successful extensions: 1504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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