Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0845
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)                     33   0.19 
SB_27216| Best HMM Match : Lectin_C (HMM E-Value=1.9)                  31   0.59 
SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)                      31   0.78 
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               29   2.4  
SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)               29   2.4  
SB_9786| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   4.2  
SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   4.2  
SB_4382| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   4.2  
SB_14469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_38264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             28   7.3  
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   7.3  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.3  
SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/57 (42%), Positives = 31/57 (54%)
 Frame = +2

Query: 272  YFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWT 442
            Y+FS  +A T  L+  W++AR+ CR+   D VSL T  EN FV   I      Y WT
Sbjct: 1452 YYFS--NATTADLKT-WMEARDFCRKSRGDLVSLRTANENAFVFSEIK--TRYYYWT 1503


>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 577

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +2

Query: 266 HSYFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWTS 445
           H Y F   H  T      W  AR  C+R   D VS+ + QE +F+  ++   N  +IWT 
Sbjct: 309 HCYLFRMFHRLT------WPQARLRCQREGGDLVSILSQQEKDFLIYQMKTVNGIWIWTG 362

Query: 446 -GRKCNFAGCDRGDLQPPNVNGWFW 517
              +    G +  D  P +   W +
Sbjct: 363 LNDRSVERGYEWSDGSPVSFTSWLY 387


>SB_27216| Best HMM Match : Lectin_C (HMM E-Value=1.9)
          Length = 168

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 314 VDWLDARNICRRHCMDA--VSLETPQENEFVKQRI-ARGNIRYIWTSGRKCNFAGC 472
           V W +A   C  H +DA   S ET ++  FV++ +  R N+  I+   ++C+  GC
Sbjct: 24  VSWSEAARFC--HVLDASLASAETLEKLRFVRRHVMMRSNVTDIFIGLQQCHDTGC 77


>SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)
          Length = 179

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
 Frame = +2

Query: 191 LALPDPRSCANRVRHSTYRDARGVLHSYFFSW-----EHAPTRSLEVDWLDARNICRRHC 355
           L L DP  C N ++    +++  ++H  F  W     E     + E++   + N CRR+ 
Sbjct: 13  LELVDPPGCRNSIKDKGEKESMEIVHVKFCKWLLGVFEFCSILAPEIETNFSTNRCRRY- 71

Query: 356 MDAVSLETPQENEFVKQRIARGNIRYIWTSGRKC---NFAGCDRGDLQPPNVNG 508
               ++  P     +  R  RG  R+ + +  +C    + G D G  +  +V G
Sbjct: 72  --MATVGKPVVPAALMNRPTRGERRFAYWALAECILAYYVGTDEGVSEVLHVAG 123


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 413 ARGNIRYIWTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPTTQRNTGDWSYTGGY 589
           A G+   I T+   C     +R  L   N  G +  G G+ + P + +N G  +Y G Y
Sbjct: 760 AIGDCSSIETAPHPCTAQVAERQGLYLANSLGLYSQGKGSDVKPFSWKNMGMLAYLGDY 818


>SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)
          Length = 229

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = -3

Query: 485 GHRGHSRRNYIYDQKSKCNVCFRERSFALQIRFPGVFLRKQRP--CNACGRCSLRPANPL 312
           G+R   R  +  ++  KC  C +  + A +++   +    ++P  C+ CG+CS +  N  
Sbjct: 22  GNRNQHREKHYGNKPFKCEQCGKCFTEAARLK-DHILHTGEKPYQCSQCGKCSAKSGNHK 80

Query: 311 LSCVLEHVPS*RNTNVVLPVHRGMSNGVL 225
           +  VL H  S +    VL V R +++ V+
Sbjct: 81  IH-VLIH--SGKKPLSVLSVIRSLNSAVM 106


>SB_9786| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 129

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 317 DWLDARNICRRHCMDAVSLETPQENEFVKQRIA 415
           +W DA ++CR      V +E+  E+EFV + +A
Sbjct: 23  NWYDAESMCRDLGGYLVKIESKSEDEFVSRELA 55


>SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 314 VDWLDARNICRRHCMDAVSLETPQENEFV 400
           ++W DAR  C +   D V + + QEN FV
Sbjct: 24  MNWADARTACGKLGGDLVKITSEQENTFV 52


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 317 DWLDARNICRRHCMDAVSLETPQENEFVKQRIA 415
           +W DA ++CR      V +E+  E+EFV + +A
Sbjct: 23  NWYDAESMCRDLGGYLVKIESKSEDEFVSRELA 55


>SB_4382| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 492

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 317 DWLDARNICRRHCMDAVSLETPQENEFVKQRIA 415
           +W DA ++CR      V +E+  E+EFV + +A
Sbjct: 386 NWYDAESMCRDLGGYLVKIESKSEDEFVSRELA 418


>SB_14469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 437 KCNVCFRERSFALQIRFPGVFLRKQRPCNACGRC 336
           +C  CF +RS +L+I        K   CN CG+C
Sbjct: 117 QCGKCF-DRSTSLKIHLLTHSGHKPHQCNKCGKC 149



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = -3

Query: 515 RTNRSHLEAVGHRGHSRRNYIYDQKSKCNVCFRERSFALQIRFPGVFLRKQRPCNACGRC 336
           R+    +  + H GH        Q +KC  CF +  + L+         K   C+ CG+C
Sbjct: 124 RSTSLKIHLLTHSGHKPH-----QCNKCGKCFSQSGY-LKTHLMIHSGLKPHKCSECGKC 177

Query: 335 SLRPAN 318
              P+N
Sbjct: 178 FALPSN 183


>SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +2

Query: 320 WLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWTSGRKCNFAG 469
           W DA  +CR      +++    E E +++ I   N+ + W   R  +  G
Sbjct: 275 WRDAMTLCREQGAGLLTVRDANEMEVIRKHIKEKNL-FFWLGARYSHVNG 323


>SB_38264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 446 GRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPTTQRNT 562
           GR C    C   D +  N+ GW   G+  K  PT   N+
Sbjct: 39  GRYCQGRICANFDFEEGNLTGWIQEGTAFKNQPTYGDNS 77


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 311 EVDWLDARNICRRHCMDAVSLETPQENEFV 400
           E+ W DAR  C     D V + + +ENEFV
Sbjct: 134 EMAWNDARAACGDMGGDLVQIASKEENEFV 163


>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -3

Query: 614 LCYQAALDRSHRCKTNRPCYVGWWARSWLPNLTRTNRSHLEAVGH 480
           LC Q   +RSH+      C    WA  W   L R    H E   H
Sbjct: 225 LCKQRRHERSHQKNRQFKCNKCSWAFPWKCELVRHQTRHTEKYVH 269


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 320 WLDARNICRRHCMDAVSLETPQENEFVKQRI 412
           W + R  C+    D VS+ET +E  F+ ++I
Sbjct: 370 WTENREKCKSRNGDLVSMETEEEWSFINKKI 400


>SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 629 YLEQLLCYQAALDRSHRCKTN 567
           Y E ++ Y+ A+D  H+CK+N
Sbjct: 703 YREYIMNYKTAIDTIHKCKSN 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,297,395
Number of Sequences: 59808
Number of extensions: 529257
Number of successful extensions: 2107
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2106
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)