Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0845
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro...    33   0.12 
At4g37190.1 68417.m05265 expressed protein                             30   1.5  
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ...    29   2.6  
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    29   2.6  
At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger) fa...    29   3.4  
At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    29   3.4  
At2g25660.1 68415.m03075 expressed protein                             27   7.9  
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    27   7.9  
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ...    27   7.9  
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    27   7.9  
At1g26650.1 68414.m03245 expressed protein                             27   7.9  

>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 1102

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 308 LEVDWLDARNICRRHCMDAVSLETPQENEFVKQR 409
           ++V W D    CRR  +  + +ETP ++EFV ++
Sbjct: 458 VDVSWQDGTIECRREAITLIPIETPGDHEFVSEQ 491


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
 Frame = +1

Query: 76  VRASVFHSLHQHYRDEPALL-----PGGSSFVRGTMLR*GPETSSFTRSQELCQPSTPFD 240
           V A    ++   Y + P LL     P      + T+     +  SF+R    C+  TP  
Sbjct: 227 VAADFLENMADEYTNVPVLLYSVRTPMSQMSSKKTVSNKLHDAISFSRLSSFCKLFTPIG 286

Query: 241 IPRCTGSTTFVFL*LG 288
           +P  TGS    FL LG
Sbjct: 287 LPSLTGSKASKFLNLG 302


>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
           related to blue copper-binding protein; similar to
           Stellacyanin (SP:P00302) {Rhus vernicifera}
          Length = 301

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
 Frame = +2

Query: 497 NVNGWFW-------SGSGAKIGPTTQRNTGDWSYTGGYGQA--QPDNREAAQGND 634
           N +GW W       SGSG+   P   R + +WS   G+  +    DN   + G+D
Sbjct: 79  NGSGWGWGTGSNRGSGSGSSTNPDGSRRSWNWSLKSGWSWSWGSNDNDSNSSGSD 133


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 151 NCCRQAKVPAHLCSVDEDCETRMRVLAENGYG 56
           +CC Q KV   L S +ED E  +R +  +GYG
Sbjct: 5   SCCNQQKVKRGLWSPEED-EKLIRYITTHGYG 35


>At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 386

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 265 TFVFL*LGTCSNTQLRSGLAGRKEHLPQALHGRCFLRNTPGKRICKAKDRSRKHTLHL 438
           TFV L    C +  LRSG   R+ H  +   G  F R+T         D++   +L L
Sbjct: 5   TFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPL 62


>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 482 DLQPPNVNGWFWS---GSGAKIGPTTQRNTGDWSYTGGYGQAQP 604
           ++QP  + G F S    SG +IG     + G WS  GG G  +P
Sbjct: 100 EMQPGRLGGGFSSYGGRSGGRIGRDRDDSDGSWSGGGGGGGRRP 143


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 37  IKAARARRSRSPQVRASVFHSLHQHYRDEPALL 135
           I A +    RS     S FHSL Q   DEP++L
Sbjct: 377 ISAKKRILERSASAALSYFHSLSQQKLDEPSVL 409


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 500 VNGWFWSGSGAKIGPTTQRNTGDWSYTGGY 589
           +NG   S    +IGP T R T  +   GGY
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGY 290


>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 310

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 500 VNGWFWSGSGAKIGPTTQRNTGDWSYTGGY 589
           +NG   S    +IGP T R T  +   GGY
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 500 VNGWFWSGSGAKIGPTTQRNTGDWSYTGGY 589
           +NG   S    +IGP T R T  +   GGY
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288


>At1g26650.1 68414.m03245 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 108 LMKTVKHGCAYLRRTATAGACCFDVICT 25
           L   VKH C     TA + A CF V  T
Sbjct: 89  LQPFVKHSCQKFAETAVSSAMCFPVFIT 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,979,474
Number of Sequences: 28952
Number of extensions: 342052
Number of successful extensions: 1074
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)