Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0844
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    26   0.29 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.68 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.8  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.4  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 414 ITARCKAVFPCLSLRVTSLFLSNEDSLRTSPIKIHSCRG*FS 289
           IT   + +FP L+L++T L  S +  L       H CR  FS
Sbjct: 41  ITKSGRRMFPALNLKITDLDPSADYCLFLEMTLAHHCRFKFS 82



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 434 VQLLLAHSAPVKVKNLAGWSP 496
           +++ LAH    K  +  GWSP
Sbjct: 69  LEMTLAHHCRFKFSSSVGWSP 89


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 108 IRFFSLRNYEIVPEDIVNSTSTQTFRIN 25
           I+ F  + YE+  ++I N  S ++FR+N
Sbjct: 89  IKSFFNQGYELSKQEIFNCCSKKSFRMN 116


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 453 CANNNCTHSLRPNITARCK 397
           C +NN    LR   T RCK
Sbjct: 162 CCDNNFNVFLRQVFTCRCK 180


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 142 CDNKFEFLILSYRLDLNHNCSHKVV*LFENYDSAVT 249
           CD  +EF I ++ + L  +   + V L E  ++  T
Sbjct: 569 CDLMYEFQIFTFLMSLLQSIKRRYVLLNEKVEAIKT 604


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 543 WYVNSSNRLENKWK 584
           W+  SSN   NKW+
Sbjct: 54  WFAGSSNVGINKWR 67


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 422 RKECVQLLLAHSAPVKVKNLAGWSPLAEAISY 517
           R E  +L      P+    LA WSPL     Y
Sbjct: 409 RYELGELAPGLVGPLLTSALASWSPLTNPKQY 440


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,960
Number of Sequences: 336
Number of extensions: 3223
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)