Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0844
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 42 5e-05
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 41 1e-04
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 40 2e-04
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 38 9e-04
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 37 0.002
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 37 0.003
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 35 0.011
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 34 0.015
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 31 0.14
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.7
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 3.8
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S... 25 6.7
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 25 8.9
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 42.3 bits (95), Expect = 5e-05
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 377 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKN-LAGWSPLAEAISYGDRQTISTLV 547
D NTALH AV R ECV++LL A ++ L W+PL A + G + +S LV
Sbjct: 364 DASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLASATGLSEIVSILV 421
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 365 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTISTL 544
+ +KD G T LH A +G+ + V+ L++ AP+ + G++PL A++ G L
Sbjct: 134 IRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVEL 193
Query: 545 VRKLKQQAREQME 583
VR R+ E
Sbjct: 194 VRAGADTLRKDSE 206
Score = 35.5 bits (78), Expect = 0.006
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 338 LSSLLRNNEV--TRKDKHGNTALHLAVMLGRKECVQLLLAHSAP--VKVKNLAGWSPLAE 505
+ L+ ++V T + G T LH A GR VQ LL AP ++ K+L G +PL
Sbjct: 89 IEELINRSDVDPTITTRGGQTCLHYAAGKGRLSIVQ-LLCDKAPELIRKKDLQGQTPLHR 147
Query: 506 AISYGDRQTISTLV 547
A + G Q + L+
Sbjct: 148 AAAVGKIQVVKYLI 161
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 320 IGDVRKLSSLLRNNEVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPL 499
I V+K+ L + +++ GNTA+H A + G E +LLL +KN+ SP+
Sbjct: 49 IAVVQKIIPYLNKEVINAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPI 108
Query: 500 AEA 508
EA
Sbjct: 109 YEA 111
Score = 28.3 bits (60), Expect = 0.95
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 362 EVTRKDKHGNTALHLAVMLGRKECVQLLLAH 454
E++R+D++GN+ LH+A G VQ ++ +
Sbjct: 28 ELSRRDENGNSGLHMASANGHIAVVQKIIPY 58
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 38.3 bits (85), Expect = 9e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 359 NEVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWS 493
N + +DK+G+TAL++A +G K V++L+ A + N AG S
Sbjct: 475 NYLNHQDKNGDTALNIAARIGNKNIVEVLMQAGASAYIPNRAGLS 519
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 308 ECIFIGDVRKLSSLLRNNEVTRKDKHGNTALHLAVMLGRKECVQLLLAH 454
+C + V+ + S+ + +V DK+ NT LHLA M GR++ V+ LL H
Sbjct: 64 QCANVQMVKHILSVF-DVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 365 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSA-PVKVKN-LAGWSPLAEAISYGDRQTIS 538
+ +KD++G T LH+AV + V+ LL H V V++ +G++ L AI G+ + S
Sbjct: 45 INQKDRYGRTVLHIAVSENKNSFVRSLLQHKGIDVFVQDEESGYTALHRAIYVGNLEAAS 104
Query: 539 TLVRK 553
L+ K
Sbjct: 105 LLLSK 109
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 377 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTISTLVRKL 556
D G+T+LH A +G E ++LLL +A + V N +PL ++ + + T + L
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVL 304
Query: 557 K 559
+
Sbjct: 305 E 305
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 365 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKN 478
V +D +G+T+L +A G +CV LL+++A + N
Sbjct: 362 VNLQDSNGDTSLLIAARNGAMDCVNSLLSYNANPSIPN 399
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 365 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSP 496
+ +D HG+TAL + G K+C +LLL+ A + N G P
Sbjct: 351 INLQDDHGDTALLICARNGAKKCARLLLSFYASSSIPNNQGQYP 394
Score = 29.5 bits (63), Expect = 0.41
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 377 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTIST--LVR 550
D+ G+TALH A +G E + LL A V N + L + + + T +V
Sbjct: 234 DEDGHTALHWAAAMGNLEMMHALLQAGANVVAVNYLQQTSLMRCVMFTMNYDLQTFEVVS 293
Query: 551 KLKQQA 568
+L Q A
Sbjct: 294 ELLQSA 299
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 31.1 bits (67), Expect = 0.14
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 299 PLHECIFIGDVRKLSSLLRNN-EVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVK 475
P+H G V+ + L+++ + KDK G LHLAV V LL V ++
Sbjct: 71 PIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHAASPLLVVYLLHLDISVDLR 130
Query: 476 NLAGWSPLAEAISYGDRQTISTLVR 550
+ +PL A +G+ + L+R
Sbjct: 131 DDQQHTPLMWASYHGNEPITNCLLR 155
Score = 26.6 bits (56), Expect = 2.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 323 GDVRKLSSLLRNN--EVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVK-VKNLAGWS 493
G++ + +L+ + +V D+ G TALH A + + + LL H A V + +
Sbjct: 11 GELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNAIGGDLQAA 70
Query: 494 PLAEAISYGDRQTISTLVR 550
P+ A G +T+ LV+
Sbjct: 71 PIHWAAKRGSVKTVHYLVQ 89
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 456 LCANNNCTHSLRPNITARCKAVFPCLSLRVTSLFLSNEDSLRTSPIKIHSC 304
L +NN TH L+ +C A FP L LFLS E++L T H C
Sbjct: 579 LACDNNGTHVLQ-----KCIAKFPPEKLE--PLFLSMEENLITLATNRHGC 622
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -3
Query: 430 LFTSQHNSKVQSCVPMFVLTGHLIIS 353
+FT + ++K SC+ F ++GHL++S
Sbjct: 259 IFTWKGHTKGISCLRFFPISGHLLLS 284
>SPAC105.02c |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 6.7
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Frame = +2
Query: 260 MSNANYSEGKENYPLHECIFIGDVRKLSSLLRNNEVTRKDK---HGNTALHLAVMLGRKE 430
++NA S G N +H C G + L LL + V ++ G+T LH AVM +K+
Sbjct: 39 INNARDSLG--NDCVHVCTKYGSLECLDWLLDISGVNLNNRCRMTGDTPLHFAVMFIKKD 96
Query: 431 ------CVQLLLAHSAPVKVKNLAGWSPL 499
V++L+ A + N G+ P+
Sbjct: 97 QETALRMVEMLMEVGADPLLTNNDGFRPI 125
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 390 FPCLSLRVTSLFLSNEDSLRTSPIKIHSC 304
FPCLSL ++ + E R + + + SC
Sbjct: 150 FPCLSLYISMTYKREEQGKRLAYLYVCSC 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,465
Number of Sequences: 5004
Number of extensions: 53736
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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