Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0844
         (624 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          31   0.039

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 30.7 bits (66), Expect = 0.039
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = +2

Query: 365  VTRKD-KHGNTALHLAVMLGRKECVQLLLAHSAPV--KVKNLAGWSP--LAEAISYGDRQ 529
            V  KD KHGN  LH+AV     + V  +L        + +N AG++P  LA+A S+  + 
Sbjct: 877  VREKDLKHGNNILHIAVDNDALDIVHYILEEVKEELGRERNNAGYTPLQLADAKSHTGQG 936

Query: 530  TISTLVRKL 556
                +VR+L
Sbjct: 937  NNKLIVREL 945



 Score = 27.5 bits (58), Expect = 0.37
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +2

Query: 392 TALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTISTLVRKLKQQAR 571
           T LHLAV    +  V+ LL   A +   +  G +PL  A+     + +  +VR L  Q  
Sbjct: 786 TGLHLAVSCNSEPIVKALLGAGAKLHYCDYRGNTPLHRAVV----ENVPDMVRLLLLQGG 841

Query: 572 EQMEIRRPDLIRAL 613
            +++    D + AL
Sbjct: 842 LRLDCTNDDGLTAL 855



 Score = 24.6 bits (51), Expect = 2.6
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 377  DKHGNTALHLAVMLGRKECVQLLLAHSA-PVKVKNLAGWSPLAEAISYGDRQTISTLVRK 553
            D  GNT LH AV+    + V+LLL      +   N  G + L  A+ Y     I+ ++ +
Sbjct: 814  DYRGNTPLHRAVVENVPDMVRLLLLQGGLRLDCTNDDGLTALQAAV-YARNLKITRILLE 872

Query: 554  LKQQAREQ 577
                 RE+
Sbjct: 873  AGASVREK 880


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,055
Number of Sequences: 2352
Number of extensions: 14115
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)