Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0841
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 216 3e-57
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 31 0.18
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 28 0.97
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 28 0.97
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 28 0.97
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 28 0.97
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 28 1.3
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.0
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 3.0
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 26 3.9
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 5.2
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 5.2
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 9.0
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 216 bits (527), Expect = 3e-57
Identities = 95/137 (69%), Positives = 116/137 (84%)
Frame = +3
Query: 213 PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 392
PVV++ GDEMTR+IW +I+EKL+LP++DI+L YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19 PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78
Query: 393 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 572
VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW PI
Sbjct: 79 VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138
Query: 573 IIGRHAHADQYKATDFV 623
IGRHA DQYK+TD V
Sbjct: 139 CIGRHAFGDQYKSTDLV 155
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 30.7 bits (66), Expect = 0.18
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 225 ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 401
I GD + R + + E + IE D+ GME +K+ + +++K+ VG+
Sbjct: 26 IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85
Query: 402 KCATITPDEK 431
K TP EK
Sbjct: 86 KGILFTPFEK 95
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -2
Query: 298 MSKKGRISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKQVLLRLVGTSY 131
++K+ +I FS I+L I ++ + + +++ ST +NK+++L + TS+
Sbjct: 141 LTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETF--STRLNKKIILNTIVTSF 194
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -2
Query: 298 MSKKGRISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKQVLLRLVGTSY 131
++K+ +I FS I+L I ++ + + +++ ST +NK+++L + TS+
Sbjct: 141 LTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETF--STRLNKKIILNTIVTSF 194
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -2
Query: 298 MSKKGRISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKQVLLRLVGTSY 131
++K+ +I FS I+L I ++ + + +++ ST +NK+++L + TS+
Sbjct: 141 LTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETF--STRLNKKIILNTIVTSF 194
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -2
Query: 298 MSKKGRISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKQVLLRLVGTSY 131
++K+ +I FS I+L I ++ + + +++ ST +NK+++L + TS+
Sbjct: 141 LTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETF--STRLNKKIILNTIVTSF 194
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 138 VPTNLKSTCLFIEVERYNMSKI--KAGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHV 311
VPTN T L + E ++K K V +G E+ + W + LI +D L +
Sbjct: 95 VPTNTPITTLADDAEELALAKEYWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRL 154
Query: 312 YD 317
YD
Sbjct: 155 YD 156
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -3
Query: 246 WSFHHQGCQQQVQPLF*TYCIFL 178
W H+G V P F YC FL
Sbjct: 721 WEIRHRGAFTSVYPCFIEYCSFL 743
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 626 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 483
D+K + L+S +++S + VPP KSR I+A+ + +S K+ D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 304 NSMSKKG-RISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKQVL 155
N + K G + SL+++ + +S ST AFI + + STS N VL
Sbjct: 9 NDLKKSGFMLRQSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSSNDTVL 59
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 580 PMMMGLSHPVTSLGIFLQIIASLKTVP 500
P +MG + VT+ ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 273 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 383
+LI+ F D ELH + N+ + D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 515 PENSTTKNITDGPIRAFPHFLQFKFFNSLLIRSYGRTFDAHI 390
PEN TT ++ GP F + + L++ GRTF I
Sbjct: 598 PENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFI 639
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,483
Number of Sequences: 5004
Number of extensions: 55060
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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