Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0841
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 221 3e-58
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 220 6e-58
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 194 4e-50
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 116 2e-26
11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236 32 0.43
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 29 2.3
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 4.0
08_02_0103 - 12400494-12400626,12400882-12400958 29 4.0
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 27 9.3
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 221 bits (541), Expect = 3e-58
Identities = 101/144 (70%), Positives = 119/144 (82%), Gaps = 1/144 (0%)
Frame = +3
Query: 198 KIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAE 374
KIK A P+V++ GDEMTRI W IK+KLI PFLD+++ YDLG+ +RD TDD+VT++ AE
Sbjct: 5 KIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAAE 64
Query: 375 AIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 554
A KYNV IKCATITPDE RV+EF LK+MWKSPNGTIRNI+ GTVFRE IICKN+PRLV
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLVP 124
Query: 555 GWDKPIIIGRHAHADQYKATDFVV 626
GW KPI IGRHA DQY+ATD V+
Sbjct: 125 GWTKPICIGRHAFGDQYRATDAVL 148
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 220 bits (538), Expect = 6e-58
Identities = 100/145 (68%), Positives = 119/145 (82%), Gaps = 1/145 (0%)
Frame = +3
Query: 195 SKIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCA 371
+KIK A P+V++ GDEMTR+ W IK+KLI PFL++++ +DLG+ RD+TDD+VT++ A
Sbjct: 4 TKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAA 63
Query: 372 EAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLV 551
EA KYNV IKCATITPDE RV+EF LK MWKSPNGTIRNIL GTVFRE IICKNIPRLV
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLV 123
Query: 552 TGWDKPIIIGRHAHADQYKATDFVV 626
GW KPI IGRHA DQY+ATD V+
Sbjct: 124 PGWTKPICIGRHAFGDQYRATDAVI 148
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 194 bits (474), Expect = 4e-50
Identities = 97/150 (64%), Positives = 108/150 (72%), Gaps = 18/150 (12%)
Frame = +3
Query: 231 GDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 410
GDEMTR+IW IK+KLI PFLD+++ YDLG+ NRD T D+VTI+ AEA KYNV IKCA
Sbjct: 42 GDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNVAIKCA 101
Query: 411 TITP------------------DEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKN 536
TITP DE RV+EF L MWKSPNGTIRNIL GTVFRE IICKN
Sbjct: 102 TITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKN 161
Query: 537 IPRLVTGWDKPIIIGRHAHADQYKATDFVV 626
IPRLV GW KPI IGRHA DQY+ATD V+
Sbjct: 162 IPRLVPGWIKPICIGRHAFGDQYRATDTVI 191
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 116 bits (279), Expect = 2e-26
Identities = 53/95 (55%), Positives = 72/95 (75%)
Frame = +3
Query: 270 EKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFK 449
+ LI P+L++++ +DLG+ NRD TDD+VT++ AEA T+T DE RV+EFK
Sbjct: 99 DDLIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFK 157
Query: 450 LKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 554
LK MW+SPNGTIRNIL GTVFRE I+CKN+PR+++
Sbjct: 158 LKSMWRSPNGTIRNILNGTVFREPILCKNVPRILS 192
>11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236
Length = 439
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 196 DILYLSTSMNKQVLLRLVGTSYCASATKETKYIKWI 89
DIL L N++V+ + T++ + K T Y+KW+
Sbjct: 174 DILALEYGWNEEVIAQFYATAFFGTTRKGTPYVKWL 209
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -2
Query: 565 LSHPVTSLGIFLQIIASLKTVPPRILRMVPLGLFH 461
+ H +TSL ++I L+ +PPR+ R V LG+FH
Sbjct: 165 VEHFITSLRDEVRI---LRELPPRVKRRVELGMFH 196
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 447 KLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDK 566
K++ W+ P I VFR NIP TGWDK
Sbjct: 69 KMEAFWRVPKWKIEKAKVKVVFRLQFHATNIPS--TGWDK 106
>08_02_0103 - 12400494-12400626,12400882-12400958
Length = 69
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 246 WSFHHQGCQQQVQP 205
WS HHQGCQ + P
Sbjct: 12 WSLHHQGCQPRALP 25
>06_03_0032 -
15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 310 TCNSMSKKGRISFSLIRSQIILVISS 233
TC+SMS++G I++S + QI SS
Sbjct: 181 TCSSMSEQGAITYSSMTEQIATASSS 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,128
Number of Sequences: 37544
Number of extensions: 335865
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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