Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0841
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)               206   1e-53
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     196   1e-50
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            28   7.2  
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_7874| Best HMM Match : PSI (HMM E-Value=8.4)                        28   7.2  
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_32988| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-25)            27   9.5  

>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score =  206 bits (503), Expect = 1e-53
 Identities = 96/111 (86%), Positives = 102/111 (91%)
 Frame = +3

Query: 297 IELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPN 476
           +EL  YDL +ENRD T+DQVTID A AIK+ +VGIKCATITPDEKRVEEFKLKKMWKSPN
Sbjct: 1   MELKSYDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPN 60

Query: 477 GTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVP 629
           GTIRNILGGTVFREAIICKNIPRLV+ W KPIIIGRHAHADQYKATDFVVP
Sbjct: 61  GTIRNILGGTVFREAIICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVP 111


>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  196 bits (478), Expect = 1e-50
 Identities = 85/118 (72%), Positives = 104/118 (88%)
 Frame = +3

Query: 273 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKL 452
           +LI P+LD+++  +DLG+E+RD T+D+VT++ AEAI+K++VGIKCATITPDE RVEEFKL
Sbjct: 19  QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKL 78

Query: 453 KKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVV 626
           KKMWKSPNGTIRNILGGTVFR  IICK +PRLV GW+KPI+IGRHA  DQY+A DF V
Sbjct: 79  KKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIGRHAFGDQYRARDFAV 136


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 321 GMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILG 500
           G+ +RD   D + +     +K  + G  CATITP++ +         W +P    R   G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394

Query: 501 GTV 509
             V
Sbjct: 395 PRV 397


>SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 438 EEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 605
           EE     M   P   +   +G +  ++  + +N+ RL+  +D P+++ R  H D +
Sbjct: 461 EELMNLNMKNGPQRLVSLDVGTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 516


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +3

Query: 249 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 410
           ++  + K+K +LP++ +E+ +      DL  +  R  T++ V +    A+K     ++ +
Sbjct: 574 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 633

Query: 411 TITPDEKRVEE 443
            + P+E+RV +
Sbjct: 634 DVEPNEQRVRQ 644


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 276 LILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 410
           L+L  L +E+    LG  N+DK    +T D    IK+Y    K A
Sbjct: 442 LLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYPKNNKAA 486


>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
 Frame = +3

Query: 249 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 410
           ++  + K+K +LP++ +E+ +      DL  ++ R  T++ V +    A+K     ++ +
Sbjct: 690 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDDLRWITNEDVPLATVSAVKMVQFNLQKS 749

Query: 411 TITPDEKRVEE 443
            + P+E+RV +
Sbjct: 750 DVEPNEQRVRQ 760


>SB_7874| Best HMM Match : PSI (HMM E-Value=8.4)
          Length = 275

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +3

Query: 435 VEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 605
           +  F L    K+P+ T+    G +  ++  + +N+ RL+  +D P+++ R  H D +
Sbjct: 37  LNRFPLNHDVKTPSFTV----GTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 89


>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1364

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +3

Query: 249 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 410
           ++  + K+K +LP++ +E+ +      DL  +  R  T++ V +    A+K     ++ +
Sbjct: 688 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 747

Query: 411 TITPDEKRVEE 443
            + P+E+RV +
Sbjct: 748 DVKPNEQRVRQ 758


>SB_32988| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-25)
          Length = 180

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +3

Query: 243 TRIIWDLIKEKLILPFLDIELH-----VYDLGMENRDKTDDQVT 359
           TR I  ++KE  +LP + +EL+     +  LGME +   D Q+T
Sbjct: 1   TRYIRFVVKEWNVLPAIRVELYGCEACLSPLGMETKSIADSQIT 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,433,305
Number of Sequences: 59808
Number of extensions: 398046
Number of successful extensions: 909
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)