Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0841
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   0.61 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   2.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   2.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 280 FFLSWTLNYMSTTWVW 327
           FF+ WT  Y+ + W W
Sbjct: 269 FFICWTPYYVMSLWYW 284


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -1

Query: 278 QLFFDKIPDYSGHFITKDVNNRSSLYFRHIVSFYFYE*TSTLKISGNVLLC 126
           QL++  +P+YS   I +  N   + Y + +           L++ G  +LC
Sbjct: 269 QLYYPHVPEYSSSIIMELHNIEGTHYVKIVYYLGIPSEARELQLPGCEVLC 319


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -1

Query: 278 QLFFDKIPDYSGHFITKDVNNRSSLYFRHIVSFYFYE*TSTLKISGNVLLC 126
           QL++  +P+YS   I +  N   + Y + +           L++ G  +LC
Sbjct: 284 QLYYPHVPEYSSSIIMELHNIEGTHYVKIVYYLGIPSEARELQLPGCEVLC 334


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 202 ILDILYLSTSMNKQVLLRLVGT 137
           ILD L LST  +K++L  + GT
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGT 85


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 202 ILDILYLSTSMNKQVLLRLVGT 137
           ILD L LST  +K++L  + GT
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGT 85


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 202 ILDILYLSTSMNKQVLLRLVGTSYC 128
           ILD L LST  +K++L  +    +C
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQDADFC 88


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 202 ILDILYLSTSMNKQVLLRLVGT 137
           ILD L LST  +K++L  + GT
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGT 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,905
Number of Sequences: 438
Number of extensions: 3969
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)