Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0839
(373 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 213 1e-56
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 116 2e-27
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 107 4e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 84 8e-18
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 67 1e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 2e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 3e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 4e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 35 0.005
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 26 2.2
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 3.8
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 3.8
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe... 25 3.8
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 5.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 5.0
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 5.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 5.0
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 24 6.7
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 24 8.8
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 24 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 213 bits (519), Expect = 1e-56
Identities = 98/111 (88%), Positives = 103/111 (92%)
Frame = -3
Query: 335 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 156
LEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY
Sbjct: 236 LEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYG 295
Query: 155 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 3
N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSIL
Sbjct: 296 NVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSIL 346
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 116 bits (278), Expect = 2e-27
Identities = 51/112 (45%), Positives = 72/112 (64%)
Frame = -3
Query: 338 PLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLY 159
P +Y+LPD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY
Sbjct: 240 PQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLY 299
Query: 158 ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 3
+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSIL
Sbjct: 300 SNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSIL 351
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 107 bits (258), Expect = 4e-25
Identities = 55/122 (45%), Positives = 80/122 (65%), Gaps = 11/122 (9%)
Frame = -3
Query: 335 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 156
L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY
Sbjct: 236 LMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYR 295
Query: 155 NTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGS 9
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG+
Sbjct: 296 AIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGA 355
Query: 8 IL 3
+L
Sbjct: 356 VL 357
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.8 bits (198), Expect = 8e-18
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 11/120 (9%)
Frame = -3
Query: 329 KSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVD 177
K +E PDG G ERFR E LF PSF + G+HE Y SI+ CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 176 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSIL 3
+R L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSIL
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSIL 398
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 66.9 bits (156), Expect = 1e-12
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = -3
Query: 305 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 126
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 125 YPGIADRMQKEITALAPSTMKIKIIAPPE 39
+PG R+ E+ +LAP+ ++K+ P +
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSD 360
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.9 bits (146), Expect = 2e-11
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Frame = -3
Query: 224 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 45
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 44 ---PERKYSVWIGGSIL 3
ER Y+ W+GGSIL
Sbjct: 385 GHVVERSYASWLGGSIL 401
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.4 bits (135), Expect = 3e-10
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Frame = -3
Query: 299 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 123
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 122 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSIL 3
+R+Q+++ + + + +I+ ++ +VW GGS+L
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLL 393
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.0 bits (134), Expect = 4e-10
Identities = 25/92 (27%), Positives = 49/92 (53%)
Frame = -3
Query: 284 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 105
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 104 MQKEITALAPSTMKIKIIAPPERKYSVWIGGS 9
+++E+T++ P I + W G S
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 34.7 bits (76), Expect = 0.005
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -3
Query: 170 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSI 6
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACI 584
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 2.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 340 PPSRSLTNFPTVRSSLSETKDSVAQRLSS 254
PPS + FP + S++S + DSV+Q SS
Sbjct: 147 PPSSASAPFP-INSNISNSLDSVSQHNSS 174
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.0 bits (52), Expect = 3.8
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = -3
Query: 302 VITIGNERFRCPEALFQPSFLG-MEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 126
++T+ NE + E L S + E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 125 YPGIADRMQKEITALAPSTMKIKIIAPPERKYS 27
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 3.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 337 PSRSLTNFPTVRSSL--SETKDSVAQRLSSNPRSWVWKLAAST 215
P+ T F V L SET +SV R S + +WKL T
Sbjct: 216 PTNKETQFLAVGGMLKFSETTESVFMRTSGRNQIQLWKLENKT 258
>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 3.8
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -1
Query: 328 SLTNFPTVRSS---LSETKDSVAQRLSSNPRSW-VWKLAASTRPHI 203
S T+ P VR S L D A L P +WK A ST PH+
Sbjct: 3 SYTHMPYVRPSAILLGIAFDHAASFLVYGPLMGDIWKRAMSTAPHV 48
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 5.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 42 WRSNDLNLHCRWGESCD 92
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 349 VPGPPSRS-LTNFPTVRSSLSETKDSVAQRLSSNPRS 242
+P P S L+ FP++ ++SE +Q+ +S+P S
Sbjct: 294 IPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNS 330
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.6 bits (51), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 343 GPPSRSLTNFPTVRSSLSETKDS 275
G S S + VRSSLS+TKD+
Sbjct: 1510 GTMSSSSFEYQLVRSSLSDTKDT 1532
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 5.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 270 PRGSLPTLVLGYGSLRHP 217
P G++PTL+LG G + HP
Sbjct: 568 PLGNVPTLILG-GDVYHP 584
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Frame = +3
Query: 234 HTQERGLEESLWATESFVSDSDDLTV-------GKFVRLLEG 338
H +RG+ + + + VS S DLT+ GK +R+L+G
Sbjct: 386 HAHQRGIACAQYNGKFIVSGSSDLTIRIFEASSGKLLRMLQG 427
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 6.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 116 FQGTWWYHRTIRCW 157
F+ WY R I CW
Sbjct: 179 FENVQWYFRYINCW 192
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 176 IRKDLYANTVLSGGTTMYPGIADRMQKEI 90
I LY++ S T + GI DR++K +
Sbjct: 533 IYSSLYSSLNSSNSTVSFSGIFDRVEKSV 561
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -2
Query: 300 HHYRKRKIPLPRGSLPTLVLGYGSLRHPRDHI*LHHEV 187
+H +K PR + P + + + + +P DH+ H V
Sbjct: 180 NHLPSKKELFPRETKPQVEVVHARINNPDDHLRTHPSV 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,567
Number of Sequences: 5004
Number of extensions: 36272
Number of successful extensions: 128
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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