Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0838
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.016
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   1.8  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    27   1.8  
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    27   1.8  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    27   3.2  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    27   3.2  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   4.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   5.5  
SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo...    25   7.3  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   7.3  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.7  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   9.7  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   9.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
 Frame = -1

Query: 488 PPPLRKVRAACTAASQPPFVPTPNCIGRNIPLNIGRTSLQ--QSLDTMRRSVPPTAIGLI 315
           PPPL   RA     + PP +P  +        N  RTS     +  ++  S PP+     
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435

Query: 314 PPSFFIKAHKFAPYKISAILSGTLPASIKLTSETILLSKDRPTSPA 177
           PPS  + A    P   SA ++  LPA +         +   P +PA
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481



 Score = 30.3 bits (65), Expect = 0.26
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = -1

Query: 536 IQLNAFFKSTFTNTSAPPPLRKVRAACTAAS--QPPFVPTPNCIGRNIPLNIGRTSLQQS 363
           + +N    ST +    PPP  +V AA  AA+  +PP  P P+   R  P  IG  S   S
Sbjct: 278 VSMNPAINST-SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKP-PIGNGSSNSS 335

Query: 362 LDTMRRSVPPTAIGLIP 312
           L          A G IP
Sbjct: 336 LPPPPPPPRSNAAGSIP 352


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/85 (22%), Positives = 35/85 (41%)
 Frame = +1

Query: 301 KKDGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFLK 480
           K  GG RP+ +G    ++V  +    +  I   +F     G      C +A+ +  T  K
Sbjct: 302 KASGGKRPLTIGSPRDKLVQEILRIVLEAIYEPLFNTASHGFRPGRSCHSALRSIFTNFK 361

Query: 481 GGGAEVLVKVDLKNAFNCIDRNAFL 555
             G    ++ D+K  F+ I  +  +
Sbjct: 362 --GCTWWIEGDIKACFDSIPHDKLI 384


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 311 PSFFIKAHKFAPYKISAILSGTLPASIKLTSETILLSKDRPTSPAETLIKSLKC 150
           P  FI A  + P   S  L   L AS+KL      +S+D P+   E L  + KC
Sbjct: 15  PEKFISALSY-PEHCSITLVKRLKASVKLKDLKQNISRDAPSWTFEHLFVAFKC 67


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 560 SLRKAFLSIQLNAFFKSTFTNTSAPPPLRKVRAACTAASQPPF 432
           S++  F   +L+ FF  TFT      PLRK          PP+
Sbjct: 279 SIKSNFRQYKLSPFFLDTFTGDVTNCPLRKNLLLDAIVCDPPY 321


>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 212 ILLSKDRPTSPAETLIKSLKCCGDRPSSPPAEPFLKDVIVVRTSSRDTRGKVVEDC 45
           + +S D  +     L+  LK      +   AE   K V+VVRT    T+GK+   C
Sbjct: 57  VSVSNDEDSESETELLDMLKGNSSLAALALAEGQTKMVLVVRTDLGMTKGKIAAQC 112


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 275 YKISAILSGTLPASIKLTSETILLSKDRPTSPAETLIKSLKCCGDRP 135
           Y ++A+ +G     IK T   +L ++ +PTS         K C   P
Sbjct: 23  YALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITP 69


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 221 SETILLSKDRPTSPAETLIKSLKCCGDRPSSPPAE 117
           SE+ ++ +  P+SP   L  +++  G RPS P  E
Sbjct: 128 SESAVVEQLHPSSPIPILTTAVRKKGSRPSKPQKE 162


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 513 IHLHQYFGTTPLKKGASRMYRSFTAALCTDAQLYRPE 403
           +H HQ+FG T +    SR + S   +   D +  R E
Sbjct: 7   LHFHQFFGKTRVTGSLSRQWYSKLPSKLADIKKLRSE 43


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -1

Query: 512  STFTNTSAPPPLRKVRAACTAASQPPFV--PTPNCIGRNIPLNIGRTSLQQSL 360
            +TF+      P R V +   +   PPFV    PN    N P   G    + SL
Sbjct: 1792 ATFSQDDLSDPARSVDSDSVSPPLPPFVAGSNPNARNNNNPYFYGNLHTESSL 1844


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 472 RCEPHVPQLHSRPLYRRPTVSA 407
           RC+P++PQ+ S  LYR    SA
Sbjct: 808 RCKPYLPQIVSTILYRLNNKSA 829


>SPBC1683.10c |pcl1||ferrous iron transporter
           Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 369 LQRGSADIEWDVPADTVGRRYKGR 440
           L+R   D +WD   D +   Y+GR
Sbjct: 88  LERREMDADWDAEVDELAAIYRGR 111


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 441 AALCTDAQLYRPEHPTQYRQNLFAAKPGYN 352
           A L     +YR   P+QY Q L    PG N
Sbjct: 33  AGLSVSQAVYREYPPSQYSQVLICCGPGNN 62


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 308 MAVLGLSLLAVHCAALYPGFAAKRFCR 388
           M++L  + L + CA++  G +A+ FCR
Sbjct: 1   MSLLVKAALILKCASMLQGVSAQYFCR 27


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -1

Query: 503 TNTSAPPPLRKVRAACTAASQPPFVPTPNCIGRNIPLNIGRTSLQQSLDTMRRSVPPTA 327
           T TS+ P L    +  T+ S PP   +   +   +P     T L  +  T   SVP T+
Sbjct: 379 TGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTS 437


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +1

Query: 511 DLKNAFNCIDRNAFLKEVK----EHIPSIYPYLYQC 606
           D+ NA   +D N FLK++K    +   + Y Y Y C
Sbjct: 405 DVFNAVTVLDNNLFLKDLKFGEGDGFLNYYIYNYNC 440


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 317 LGLSLLAVHCAA-LYPGFAAKRFCRY*VGCSGRYSWASVQRA 439
           +G SL  ++    L+PG    +  RY + C G++S   ++R+
Sbjct: 346 VGCSLYELYTGQILFPGRTNNQMLRYMMECKGKFSHKMLKRS 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,424
Number of Sequences: 5004
Number of extensions: 64951
Number of successful extensions: 233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)