Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0838
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43) 65 4e-11
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05) 64 7e-11
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_57622| Best HMM Match : SpoU_sub_bind (HMM E-Value=0.89) 53 2e-07
SB_19520| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_33818| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_1711| Best HMM Match : CDRN (HMM E-Value=1.9) 45 6e-05
SB_33820| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19) 38 0.005
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16) 36 0.029
SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_29322| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_51970| Best HMM Match : LacAB_rpiB (HMM E-Value=9.7) 32 0.36
SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049) 32 0.36
SB_46086| Best HMM Match : RVT_1 (HMM E-Value=1.6e-20) 31 1.1
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_46308| Best HMM Match : IMS (HMM E-Value=0) 29 2.5
SB_31168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_23639| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8) 29 3.4
SB_57595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_35443| Best HMM Match : Condensation (HMM E-Value=0.006) 29 4.4
SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 28 5.9
SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1) 28 5.9
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 28 7.7
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025) 28 7.7
>SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43)
Length = 491
Score = 65.3 bits (152), Expect = 4e-11
Identities = 37/126 (29%), Positives = 59/126 (46%)
Frame = +1
Query: 250 PDSIADILYGANLCALMKKDGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVG 429
P++I + L + L L K +G RPI G +RRI+ + + +QL G
Sbjct: 54 PETI-EPLVASRLIPLDKGEGAPRPIGAGEVVRRIIGKCVMNVAKGDVVDASSSLQLCAG 112
Query: 430 TKGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFNCIDRNAFLKEVKEHIPSIYPYLYQCY 609
G EAA+H RT + + ++ +D NAFN ++R L ++ P I Y Y
Sbjct: 113 QNSGSEAAIHGMRTIFEADDTDAVILIDASNAFNVLNRATALHNIRVLCPIIAIYAINTY 172
Query: 610 GNPSKL 627
N ++L
Sbjct: 173 RNSARL 178
>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
Length = 1442
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/124 (27%), Positives = 57/124 (45%)
Frame = +1
Query: 199 LLKSIVSLVNLMLAGSVPDSIADILYGANLCALMKKDGGIRPIAVGGTLRRIVSRLCCKE 378
L +I ++ + + + L + L L K +G +RPI VG +RRIV +
Sbjct: 103 LCDAIATMTKSLCTKYIDPKTIEPLVASRLIPLDKGEGAVRPIGVGEVVRRIVGKCVMNV 162
Query: 379 VLPILSGMFRPIQLGVGTKGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFNCIDRNAFLK 558
+ +QL G G EAA+H RT + + ++ +D NAFN ++R L
Sbjct: 163 AKGDVVDASGSLQLCAGQNSGSEAAIHGMRTIFEADDTDAVILIDASNAFNALNRATALH 222
Query: 559 EVKE 570
++E
Sbjct: 223 NIRE 226
>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 56.0 bits (129), Expect = 3e-08
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +1
Query: 100 TSFKNGSAGGLDGLSPQHFKDLI-NVSAGDVGRSLLKSIVSLVNLMLAGSVPDSIADILY 276
++ K + G G+ + ++ ++ + + G++L + I L +L + S+ +
Sbjct: 510 SALKPKGSTGPSGMDAELYRRILCSKNFATEGKTLREEIAILTRNLLKFNYQPSLLEAYT 569
Query: 277 GANLCALMKKDGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAV 456
L KK G +RPI VG LRRI+ + + P+Q+ G G EAA+
Sbjct: 570 ACRGIPLDKKPG-VRPIGVGEVLRRIMGKTASSTFKEEIKEAAGPLQVCAGHSAGVEAAI 628
Query: 457 HAARTFLKGGGAEVLVKVDLKNAFNCIDR 543
HA ++V++ +D NAFN ++R
Sbjct: 629 HAMSQVFYEEESDVVLLIDATNAFNQMNR 657
>SB_57622| Best HMM Match : SpoU_sub_bind (HMM E-Value=0.89)
Length = 277
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +1
Query: 298 MKKDGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFL 477
+ K+ G+RPI VG LRRI+ + + P+Q G G EAA+HA
Sbjct: 122 LNKNPGVRPIGVGEVLRRIIGKTISAMFKEEIKEAAGPLQACAGHSAGSEAAIHAMGQIF 181
Query: 478 KGGGAEVLVKVDLKNAFNCIDRNAFLKEVKE 570
G++ ++ +D NAFN + R + + E
Sbjct: 182 DEEGSDGVLLIDATNAFNLMKRAVDMHNIIE 212
>SB_19520| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 52.0 bits (119), Expect = 4e-07
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Frame = +1
Query: 196 SLLKSIVSLVNLMLAGSVPDSIADILYGANLCALMKKDGGIRPIAVGGTLRRIVSRLCCK 375
SL +I +L + V + + + L L K +G +RPI VG +RRI+S+ +
Sbjct: 13 SLCDAIATLAKKLCTELVDPATIEPILANRLIPLDKGNGEVRPIGVGEIIRRIISKCITR 72
Query: 376 EVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFLKGGGAEVLVKVD--LKNAFNCIDRNA 549
+ +Q+ G K G +AA+HA R + ++ +D + N CI NA
Sbjct: 73 VTKRDIIEASGALQVCAGLKSGAKAAIHAMRDIFDDDDTDAVLLIDASISNIIRCI--NA 130
Query: 550 F 552
F
Sbjct: 131 F 131
>SB_33818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +1
Query: 412 IQLGVGTKGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFNCIDRNAFLKEVKEHIPSIYP 591
+QL G G EAA+H RT + + ++ +D NAFN ++R L ++ P I
Sbjct: 15 LQLCAGQNSGSEAAIHGMRTIFEADDTDAIILIDASNAFNALNRATALHNIRVLCPIIAI 74
Query: 592 YLYQCYGNPSKL 627
Y Y N ++L
Sbjct: 75 YAINTYRNSARL 86
>SB_1711| Best HMM Match : CDRN (HMM E-Value=1.9)
Length = 397
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/115 (25%), Positives = 50/115 (43%)
Frame = +1
Query: 169 NVSAGDVGRSLLKSIVSLVNLMLAGSVPDSIADILYGANLCALMKKDGGIRPIAVGGTLR 348
N + SL + +L + V + + + L L K +G ++PI VG +R
Sbjct: 81 NAAKDPCSTSLCDATATLAKKLCTELVDPATIEPILANRLIPLDKGNGEVQPIGVGEIIR 140
Query: 349 RIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFLKGGGAEVLVKVD 513
RI+S+ C V +Q+ G K G +AA+HA R + ++ +D
Sbjct: 141 RIISK-CVTRVTKRDIEASGALQVCAGLKSGAKAAIHAMRDIFDDDDTDAVLLID 194
>SB_33820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 412 IQLGVGTKGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFNCIDRNAFLKEVKEHIPSIY 588
+QL G EAA H RT + + ++ +D NAFN ++R L ++E +Y
Sbjct: 15 LQLCADQNSGSEAATHGIRTIFEADDTDAVILIDASNAFNALNRATALHNIREFGALVY 73
>SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19)
Length = 674
Score = 38.3 bits (85), Expect = 0.005
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Frame = +1
Query: 79 DDVLTTITSFKNGSAGGLDGLSPQHFKDLINVSAGDVGRSLLKSIVSLVNLMLAGSVPDS 258
D VL ++S G A GLD L+ K + A ++ RSL K + NL ++ V
Sbjct: 141 DFVLNNLSSLDIGKAAGLDELNGFFLKSV----APEIFRSLTK----IFNLSVSSCV--- 189
Query: 259 IADILYGANLCALMKKDGGI------RPIAVGGTLRRIVSRLCCKEVLPILSG--MFRPI 414
+D A + L+K DG + RPI+V L +++ R + L+ +
Sbjct: 190 FSDPWKRAKVSPLLK-DGSLFDHTNFRPISVLCILSKVLKRDTYTSIYYFLTSQDLLTDF 248
Query: 415 QLGVGTKGGCE-AAVHAARTFLKG---GGAEVLVKVDLKNAFNCIDRNAFL 555
Q G CE A ++ + + LK G ++ +DLK AF+ +D N L
Sbjct: 249 QFGFRWFRSCELATINLSDSILKNMDNGLLSGMLLIDLKKAFDLVDHNTLL 299
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 307 DGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFL--- 477
+ IRPIA+ + +++ +LP + P Q V K +A V+ L
Sbjct: 1272 ENDIRPIALTCQVAKVMEGFTLNRILPPIMRKLDPNQFAVSGKSTTDALVYLLHILLHNL 1331
Query: 478 -KGGGAEVLVKVDLKNAFNCIDRNAFLKEVK 567
+G A L+ D K F+ ID N L +++
Sbjct: 1332 DRGNCAVYLLFADFKKGFDLIDHNILLDKLR 1362
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +1
Query: 307 DGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFL--- 477
+ IRPIA+ + +++ +LP + P Q K +A V+ L
Sbjct: 1489 ENDIRPIALTCQVAKVMEGFTLSRILPPIMRKLDPNQFAASGKSTTDALVYLLHILLHNL 1548
Query: 478 -KGGGAEVLVKVDLKNAFNCIDRNAFL 555
+G GA L D K F+ IDR L
Sbjct: 1549 HRGNGAGYLFFADFKKGFDLIDRKILL 1575
>SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 316 IRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFL----KG 483
I PI++ + +++ R +LP + P Q VG K +A + FL KG
Sbjct: 226 ILPISLTCQIAKVLERFTVPRILPRILVKLDPKQFAVGGKSTSQAVCYILHLFLDVLDKG 285
Query: 484 GGAEVLVKVDLKNAFNCIDRNAFLKEVKE 570
A L D + F+ ID + L+++ E
Sbjct: 286 DCAARLSFADFRKGFDLIDHHILLRKLGE 314
>SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)
Length = 908
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 412 IQLGVGTKGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFN 531
+Q+ G K G EAAVHA + + + ++ VD NAFN
Sbjct: 536 LQVCTGPKSGSEAAVHAMHSIFEADEMDAVLLVDASNAFN 575
>SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 984
Score = 35.5 bits (78), Expect = 0.039
Identities = 28/100 (28%), Positives = 44/100 (44%)
Frame = +1
Query: 76 LDDVLTTITSFKNGSAGGLDGLSPQHFKDLINVSAGDVGRSLLKSIVSLVNLMLAGSVPD 255
+D + + + +GGL G+ FK S+ ++ L + L + P
Sbjct: 369 IDGEMIKEAALRTKGSGGLSGVDANGFKRTSQKSSYNLCEGLATLTMKLCTEYVD---PV 425
Query: 256 SIADILYGANLCALMKKDGGIRPIAVGGTLRRIVSRLCCK 375
SI IL L L K G +RPI+VG +RRI+ + K
Sbjct: 426 SIGPILAN-RLIPLDKGKGKVRPISVGEVIRRIIGKCITK 464
>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1555
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 433 KGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFNCIDRNAFLKEVKEHIPSIYPYLYQCYG 612
K G E+A+HA + + ++ ++ NAFN ++R A L ++ P + Y Y
Sbjct: 971 KSGSESAIHA---IFECDETDAVLLINASNAFNSLNRAASLHNIRVLCPFVAVYAINTYK 1027
Query: 613 NPSKL 627
PS+L
Sbjct: 1028 LPSRL 1032
>SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 615
Score = 34.7 bits (76), Expect = 0.067
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +1
Query: 409 PIQLGVGTKGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFNCIDRNAFLKEVKEHIPSIY 588
P+ + G G EAA+HA ++ ++ ++ NAFN ++R + ++ I
Sbjct: 19 PLHVCAGHSVGAEAAIHAMSQVFYEEESDGVLLINATNAFNQMNRAVAMHNLRITCKDIA 78
Query: 589 PYLYQCYGNPSKL 627
Y+ Y +P++L
Sbjct: 79 LYVINTYRSPARL 91
>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 820
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +1
Query: 307 DGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFLKG- 483
+ +RPI++ + +I+ L +LP + Q V +K +A V+ L+
Sbjct: 260 ENDVRPISLTSQVAKIIEGLTLSRMLPAVLDKIDGKQFAVASKSTEQAIVYILHLMLEAL 319
Query: 484 --GGAEV-LVKVDLKNAFNCIDRNAFLKEVK 567
G V L D + AF+ ID + L ++K
Sbjct: 320 DLGNCSVRLFFADFRKAFDLIDYHILLDKLK 350
>SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 32.7 bits (71), Expect = 0.27
Identities = 27/73 (36%), Positives = 36/73 (49%)
Frame = +1
Query: 250 PDSIADILYGANLCALMKKDGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVG 429
P +I IL L L K +G +RPI VG + RI+ + SG +Q+ G
Sbjct: 269 PATIEPILAN-RLVPLDKGNGEVRPIGVGEIIGRIID-------ITEASG---ALQVCAG 317
Query: 430 TKGGCEAAVHAAR 468
K G EAA+HA R
Sbjct: 318 LKSGAEAAMHAMR 330
>SB_29322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 558 FKKSIPIDTIKCIF*IHLHQYFGTTPLKKGASRMYRSFTAALCTDAQL 415
FK S I+ IKCI I + K GA +Y SF + + T AQL
Sbjct: 23 FKCSCSIERIKCIGSIDENDSVCVVRFKDGAHSVYSSFASRVLTSAQL 70
>SB_51970| Best HMM Match : LacAB_rpiB (HMM E-Value=9.7)
Length = 347
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Frame = +1
Query: 307 DGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFL--- 477
+ IRPIA+ + +++ +LP + P Q K +A V+ L
Sbjct: 169 ENDIRPIALTCQVAKVMEGFTLSRILPPIMPRLDPNQFAASGKSTTDAHVYLFHILLHNL 228
Query: 478 -KGGGAEVLVKVDLKNAFNCIDRNAFLKEVK 567
+G A L D K F+ ID L +++
Sbjct: 229 DRGNCAGYLFFTDFKKGFDLIDHKILLDKLR 259
>SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)
Length = 588
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 307 DGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFLKG- 483
+ +RPI++ + +I+ L +LP++ Q V +K +A V L+
Sbjct: 298 ENDVRPISLTSQVAKIMEGLTLSRMLPVVLDKIDSKQFAVASKSTEQAIVFILHLMLEAL 357
Query: 484 --GGAEV-LVKVDLKNAFNCIDRNAFLKEVK 567
G V L D + AF ID + L ++K
Sbjct: 358 DLGNCSVRLFFTDFRKAFALIDHHILLDKLK 388
>SB_46086| Best HMM Match : RVT_1 (HMM E-Value=1.6e-20)
Length = 723
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 307 DGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFLKG- 483
+ +RPI++ + +I+ L +LP + Q V +K +A + L+
Sbjct: 441 ENDMRPISLTSQVAKIMEGLTLSRMLPAVLDKIDSKQFAVASKSTEQAIAYILHLMLEAL 500
Query: 484 --GGAEV-LVKVDLKNAFNCIDRNAFLKEVK 567
G V L D + AF+ ID + L ++K
Sbjct: 501 DLGNCSVRLFFADFRKAFDLIDHHILLDKLK 531
>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 326 IGLIPPSFFIKAHKFAPYKISAILSGTLPASIKLTSETILLSKDRPTSPAETLI 165
+GL P +H ++S IL+ LPAS + L RP+SP+E+ +
Sbjct: 215 LGLAWPKVSSPSHDPFAERLSRILAEALPASTWKVKKMSRLCPGRPSSPSESFV 268
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = -1
Query: 515 KSTFTNTSAPPPLRKVRAACTAASQPPFVPTPNCIGRNIPLNIGRTSLQQSLDTMRRSVP 336
+ +F TS R + + SQ + PTP ++ PL TS Q L T ++S P
Sbjct: 283 QQSFPPTSQQSFPRSAQQSYPPTSQQSYPPTPQ---QSYPL----TSQQSYLPTSQQSYP 335
Query: 335 PTAIGLIPPS 306
PT+ PPS
Sbjct: 336 PTSQQSYPPS 345
>SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +1
Query: 103 SFKNGSAGGLDGLSPQHFKDLINVSAGDVGRSLLKSIVSLVNLMLAGSVPDSIA-DILYG 279
+ + AGG + F+ ++ + S L ++L+ L D + + +
Sbjct: 389 ALRTKGAGGPSNVDAHGFQRILASKSFKKSSSDLCDALALLTRRLCTEYTDPMTIEPILA 448
Query: 280 ANLCALMKKDGGIRPIAVGGTLRRIVSR 363
+ L L K +RPI VG LRRI+ +
Sbjct: 449 SRLIQLDKGKSEVRPIGVGEVLRRIIGK 476
>SB_46308| Best HMM Match : IMS (HMM E-Value=0)
Length = 1245
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 360 GYNAAQCTANSDRPNTAIFLHQSTQIRSIQNISDTVRYTSRQ 235
GYNA T+ +D P ++ + + + S+ SDTV+ T R+
Sbjct: 1036 GYNAMLFTSGADNPCRSLGNEECSWLPSMPQESDTVQITKRE 1077
>SB_31168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.1 bits (62), Expect = 3.4
Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Frame = +1
Query: 61 LPRVSLDDVLTTITSFKNGSAGGLDGLSPQHFKDLINVSAGDVGRSLLKSIVSLVNLMLA 240
+P+V + V + + A GLDG+S + L+ +A + SL K I +
Sbjct: 28 IPKVMQEFVQGYLLQLQTCKATGLDGISAR----LLKAAAPAIAPSLTKIINQSIK---T 80
Query: 241 GSVPDSIADILYGANLCALMKKDGGI-----RPIAVGGTLRRIVSR---LCCKEVLPILS 396
G P + A +C + K + RPI++ L +++ R +C E L
Sbjct: 81 GRFPARWKE----AKVCPIYKAGDRLSVDNYRPISILPALSKVIERHIHVCLYEYLN-SH 135
Query: 397 GMFRPIQLGVGTKGGCEAAVHAARTFLKGGGAEVLVK----VDLKNAFNCIDRNAFLKEV 564
+ Q G C+ A+ +L G + L+ +D + AF+ +D + +K++
Sbjct: 136 KLLSSNQSGFRPYHSCDTALVKLIDYLIGNMDQGLISGLNLIDYRKAFDLVDHDTLIKKL 195
>SB_23639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 298 MKKDGGIRPIAVGGTLRRIVSR 363
+ K+ G+RPI VG LRRI+ +
Sbjct: 154 LNKNPGVRPIGVGEVLRRIIGK 175
>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
Length = 214
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 360 GYNAAQCTANSDRPNTAIFLHQSTQIRS 277
G+N +CTA+ + ++AIF H ST+ S
Sbjct: 143 GHNCTECTASFFQTSSAIFHHDSTKSSS 170
>SB_57595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 484 GGAEVLVKVDLKNAFNCIDRNAFLKEVKEHIPSIYPYLYQCYGNP 618
GG +L+ +DL AF+ +DR++ ++ ++P LY Y P
Sbjct: 118 GGCVMLLLLDLSAAFDTVDRSSV---GTAYLKDLWPMLYLIYTTP 159
>SB_35443| Best HMM Match : Condensation (HMM E-Value=0.006)
Length = 558
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 436 GGCEAAVHAART-FLKGGGAEVLVKVDLKNAFNCIDRNAFLKEVK 567
G AA H A L G E KV++K++FN R L EVK
Sbjct: 311 GVVTAATHIALAQILNSGAREKSAKVNIKSSFNVSMRKECLPEVK 355
>SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 647
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 82 DVLTTITSFKNGSAGGLDGLSPQHFKDLINVSAGDVGRSLLK 207
+V TIT+ KNG + G+D ++ + K SA V + L+K
Sbjct: 333 EVKDTITTLKNGKSPGIDNITAELLKADPEFSAERVHKLLVK 374
>SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1)
Length = 644
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 103 SFKNGSAGGLDGLSPQHFKDLINVSAGDVGRSLLKSIVSLVNLMLAGSVPDSIA-DILYG 279
+ + AGG + F+ ++ + S L ++L+ L D + + +
Sbjct: 370 ALRTKGAGGPSNVDAHGFQRILASKSFKKSSSDLCDALALLTRRLYTEYTDPMTIEPILA 429
Query: 280 ANLCALMKKDGGIRPIAVGGTLRRIV 357
+ L L K +RPI VG LRRI+
Sbjct: 430 SRLIPLDKGKSEVRPIGVGEVLRRII 455
>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Frame = +1
Query: 307 DGGIRPIAVGGTLRRIVSRLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFL--- 477
+ IRPIA+ +++ +LP + P Q K +A V+ L
Sbjct: 373 ENDIRPIALTCQAAKVMEGFTLSRILPPIMRKLDPNQFAASGKSTTDALVYLLHILLHNL 432
Query: 478 -KGGGAEVLVKVDLKNAFNCIDRNAFLKEVK 567
+G D K F+ ID L +++
Sbjct: 433 DRGNCPGYSFFADFKKGFDLIDHKILLDKLR 463
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 503 TNTSAPPPLRKVRAACTAASQPPFVPTPNCIGRNIP-LNIGRTSLQQSLDTMRRSVPPTA 327
T APP L + SQP VP P+ P + TS+ S S PP++
Sbjct: 917 TPYQAPPTLPPTTLTTPSWSQP--VPVPSMYQPQPPGIMQPPTSIPPSQPMAPPSFPPSS 974
Query: 326 IGLIPPS 306
+G PPS
Sbjct: 975 MGGFPPS 981
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 538 DRNAFLKEVKEHIPSIYPYLYQCYGN---PSKLV 630
+ +F K+ ++H PS Y YL +C+ + P KLV
Sbjct: 422 EERSFTKQYQKHKPSGYCYLIKCFDDQIFPPKLV 455
>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
Length = 1480
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +1
Query: 538 DRNAFLKEVKEHIPSIYPYLYQCYGN---PSKLV 630
+ +F K+ +EH PS + YL +C+ + PS+LV
Sbjct: 510 ESKSFTKQYQEHKPSGFCYLIKCFDDNIFPSELV 543
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,297,353
Number of Sequences: 59808
Number of extensions: 519733
Number of successful extensions: 1763
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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