Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0838
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 30 1.7
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 28 5.1
AC006678-4|AAK68391.1| 197|Caenorhabditis elegans Hypothetical ... 28 5.1
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 6.8
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 6.8
Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical p... 27 8.9
Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical pr... 27 8.9
AC024842-6|AAY86285.1| 215|Caenorhabditis elegans Hypothetical ... 27 8.9
AB011277-1|BAA24957.1| 269|Caenorhabditis elegans GAP-2-1 protein. 27 8.9
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -1
Query: 485 PPLRKVRAACTAASQPPFVPTPNCIGRNIPLNIGRTSLQQSLDTMRRSVPPTAIGLI 315
PP+ A+ +A S P F+PTP + + + G T+L+Q +R VP + IG +
Sbjct: 382 PPILPPGASSSAVSAPHFIPTPPGV---LQIQPGTTNLRQ----VRMWVPDSMIGAL 431
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -1
Query: 485 PPLRKVRAACTAASQPPFVPTPNCIGRNIPLNIGRTSLQQSLDTMRRSVPPTAIGLI 315
PP+ A+ +A S P F+PTP + + + G T+L+Q +R VP + IG +
Sbjct: 506 PPILPPGASSSAVSAPHFIPTPPGV---LQIQPGTTNLRQ----VRMWVPDSMIGAL 555
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = -1
Query: 503 TNTSAPPPLRKVRAACTAASQPPFVPTPNCIGRNIPLNIGRTSLQQSLDTMRRSVPP 333
T +APPP AA A P PTP N + +TS T+ PP
Sbjct: 129 TKRAAPPPPPPPAAAAAAPISPKAAPTPQSPAPNRVPHYRQTSTASVSSTIPPPPPP 185
>AC006678-4|AAK68391.1| 197|Caenorhabditis elegans Hypothetical
protein R05G9.1 protein.
Length = 197
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 91 TTITSFKNGSAGGLDGLSPQHFKDLINVSAGD 186
T + SF+ S GG+ GLSP+ K++ +VS D
Sbjct: 104 TDLESFQ--SFGGVSGLSPEDIKNIDSVSGSD 133
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = -1
Query: 488 PPPLRKVRAACTAASQPPFVPTPNCIGRNIPLNIGRTSLQQSLDTMRRSVPPTAIGLIPP 309
PPP +R AS PP P +G IPL + QQ T S PP PP
Sbjct: 94 PPPKPTIRPPPIPASPPPRPPASEPVG--IPLYSEKQHQQQLRPTTAVS-PPKPPSFAPP 150
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = -1
Query: 488 PPPLRKVRAACTAASQPPFVPTPNCIGRNIPLNIGRTSLQQSLDTMRRSVPPTAIGLIPP 309
PPP +R AS PP P +G IPL + QQ T S PP PP
Sbjct: 316 PPPKPTIRPPPIPASPPPRPPASEPVG--IPLYSEKQHQQQLRPTTAVS-PPKPPSFAPP 372
>Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical
protein ZK899.8a protein.
Length = 1207
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 553 LKEVKEHIPSI-YPYLYQCYGNPSKLVYKE 639
++E +E +P I + +L C GNP+K++ KE
Sbjct: 32 VREKEEDLPPICHGWLIVCEGNPTKMMNKE 61
>Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical
protein ZK899.8a protein.
Length = 1207
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 553 LKEVKEHIPSI-YPYLYQCYGNPSKLVYKE 639
++E +E +P I + +L C GNP+K++ KE
Sbjct: 32 VREKEEDLPPICHGWLIVCEGNPTKMMNKE 61
>Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical
protein ZK899.8a protein.
Length = 1207
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 553 LKEVKEHIPSI-YPYLYQCYGNPSKLVYKE 639
++E +E +P I + +L C GNP+K++ KE
Sbjct: 32 VREKEEDLPPICHGWLIVCEGNPTKMMNKE 61
>AC024842-6|AAY86285.1| 215|Caenorhabditis elegans Hypothetical
protein Y59H11AR.5 protein.
Length = 215
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +1
Query: 55 TTLPRVS-LDDVLTTITSFK--NGSAGGLDGL 141
TTL + S L T+TSF+ +GSA GLDGL
Sbjct: 140 TTLCKASRLSKYCNTLTSFQWTDGSASGLDGL 171
>AB011277-1|BAA24957.1| 269|Caenorhabditis elegans GAP-2-1 protein.
Length = 269
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 553 LKEVKEHIPSI-YPYLYQCYGNPSKLVYKE 639
++E +E +P I + +L C GNP+K++ KE
Sbjct: 32 VREKEEDLPPICHGWLIVCEGNPTKMMNKE 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,338,703
Number of Sequences: 27780
Number of extensions: 382166
Number of successful extensions: 1129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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