Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0838
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    26   0.37 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.4  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   4.5  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   4.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   4.5  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 117 TVFKRCNCGENVIKRH-TRQSCGR 49
           T+  +CNC  +VIK H  R+ CG+
Sbjct: 25  TMSIKCNCKRHVIKPHICRKICGK 48


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 317 IPPSFFIKAHKFAPYKISAILSGTLPASIKLTSETILLSK 198
           +PP FF    +  PY ++A +S     + K +S T+  +K
Sbjct: 63  LPPEFFDSLWQPDPYFLNAKVSEIAALNHKFSSVTLYRNK 102


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 326 IGLIPPSFFIKAHKFAPYKISAILSGTLPASIKLTSETILL 204
           +GL PP   + +   +P  +  +  GTL AS   +    LL
Sbjct: 628 LGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLL 668


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 326 IGLIPPSFFIKAHKFAPYKISAILSGTLPASIKLTSETILL 204
           +GL PP   + +   +P  +  +  GTL AS   +    LL
Sbjct: 628 LGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLL 668


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 326 IGLIPPSFFIKAHKFAPYKISAILSGTLPASIKLTSETILL 204
           +GL PP   + +   +P  +  +  GTL AS   +    LL
Sbjct: 628 LGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLL 668


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 542 LSIQLNAFFKSTFTNTSAPPPLRKVR 465
           L+I +  F  + F NT+  PP R  R
Sbjct: 5   LAILVVTFVVAVFGNTNLDPPTRPTR 30



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 411 RPEHPTQYRQNLFAAKPGYN 352
           RP HP   R+    AKPG N
Sbjct: 249 RPPHPRLRREAKPEAKPGNN 268



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 411 RPEHPTQYRQNLFAAKPGYN 352
           RP HP   R+    A+PG N
Sbjct: 81  RPPHPRLRREAELEAEPGNN 100



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 411 RPEHPTQYRQNLFAAKPGYN 352
           RP HP   R+    A+PG N
Sbjct: 137 RPPHPRLRREAELEAEPGNN 156


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 542 LSIQLNAFFKSTFTNTSAPPPLRKVR 465
           L+I +  F  + F NT+  PP R  R
Sbjct: 6   LAILVVTFVVAVFGNTNLDPPTRPTR 31


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 542 LSIQLNAFFKSTFTNTSAPPPLRKVR 465
           L+I +  F  + F NT+  PP R  R
Sbjct: 6   LAILVVTFVVAVFGNTNLDPPTRPAR 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,088
Number of Sequences: 438
Number of extensions: 4916
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)