Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0836
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    31   0.84 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +1

Query: 265 SCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 444
           S S PRR+    P ++    PR + RSP+ PR +       R  +    R+ + P R+  
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRR-------RISRSPVRRSRSPPRRQVS 140

Query: 445 ALPSTCPSRQTRPR 486
              S  P RQ R R
Sbjct: 141 RSRSPPPRRQQRSR 154


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 591 P*RFPVHVPCSLPPYTKRYKYQ*RSMWDRPYPVHIPKPVPYPVEKP 728
           P  FP  +P  +P + K   +    ++ +P P+  P P P P+ KP
Sbjct: 210 PMPFPKPMPKPMPKH-KPKPFPKPMLFPKPMPIPKPMPFPKPMPKP 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,096,367
Number of Sequences: 27780
Number of extensions: 288674
Number of successful extensions: 1152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)