BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0836 (730 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.84 U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 28 7.9 >AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical protein E01A2.4 protein. Length = 504 Score = 31.1 bits (67), Expect = 0.84 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = +1 Query: 265 SCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 444 S S PRR+ P ++ PR + RSP+ PR + R + R+ + P R+ Sbjct: 88 SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRR-------RISRSPVRRSRSPPRRQVS 140 Query: 445 ALPSTCPSRQTRPR 486 S P RQ R R Sbjct: 141 RSRSPPPRRQQRSR 154 >U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical protein T26C11.2 protein. Length = 343 Score = 27.9 bits (59), Expect = 7.9 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 Query: 591 P*RFPVHVPCSLPPYTKRYKYQ*RSMWDRPYPVHIPKPVPYPVEKP 728 P FP +P +P + K + ++ +P P+ P P P P+ KP Sbjct: 210 PMPFPKPMPKPMPKH-KPKPFPKPMLFPKPMPIPKPMPFPKPMPKP 254 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,096,367 Number of Sequences: 27780 Number of extensions: 288674 Number of successful extensions: 1152 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 919 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1125 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1718929214 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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