Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0836
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66850.1 68418.m08428 protein kinase family protein contains ...    32   0.45 
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    30   1.4  
At1g06360.1 68414.m00672 fatty acid desaturase family protein si...    29   3.2  
At5g56270.1 68418.m07022 WRKY family transcription factor              29   4.2  
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t...    28   5.5  
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    28   5.5  
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie...    28   7.3  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    28   7.3  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    28   7.3  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    27   9.6  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    27   9.6  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   9.6  
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ...    27   9.6  

>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 235 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDC 396
           PQ R+ R +     P R + PL     +  PR+S  SP  PR  T      RDC
Sbjct: 253 PQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDVTNGRRDC 306


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = +1

Query: 277 PRRKAHPLPGRKENPLPRES----ARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 444
           PRR    L  R+ +PLPR       RSP  P  +    P  R       R    PSR  G
Sbjct: 212 PRRPRERLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSR--G 269

Query: 445 ALPSTCPSRQTR-PRQG 492
             PS+ P R+ R P +G
Sbjct: 270 RSPSSPPPRRYRSPPRG 286


>At1g06360.1 68414.m00672 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 670 HMDLYWYLYLFVYGGKEQGTCTGNLYGVRYFLLYWVRSGHVH 545
           H+ ++W + L++YGG    TC G + GV  + + W+ +   H
Sbjct: 177 HVLMFWTV-LYLYGGLPYLTCGGGVGGVIGYHVTWLVNSACH 217


>At5g56270.1 68418.m07022 WRKY family transcription factor
          Length = 687

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 599 PLRGKVLSSLLGKERARALRLEHELSFQRGKVL 501
           P  G + SS +G+E++    LE ELS   G+V+
Sbjct: 19  PSPGTLFSSAIGEEKSSKRVLERELSLNHGQVI 51


>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein identical to
           pEARLI 1 (Accession No. L43080): an Arabidopsis member
           of a conserved gene family (PGF95-099), Plant Physiol.
           109 (4), 1497 (1995); contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 168

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 274 LPRRKAHPLPGRKENPLPRESARSPTLP 357
           +P  K  P+P  K  P+P  S  SP++P
Sbjct: 39  VPSPKPKPVPSPKPKPVPSPSVPSPSVP 66


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
           domain-containing protein contains Pfam profiles
           PF02170: PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -1

Query: 355 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 269
           VG+G+V   GVGD     VGDV  DGVG+
Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222


>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
           PIR:S53363
          Length = 438

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 411 TYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQNLTPLKRK 527
           T R+ +  K+   TQ  + ++  SP R + ++LTP  RK
Sbjct: 127 TIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSRK 165


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 295 PLPGRKENPLPRESARSPTLPRCQT---CPLPS*RDCQGTSSRTATLPSRKEGALPSTCP 465
           P      +P PR  +RSP+  R ++    PLPS    Q   S++ + PS  +  + +  P
Sbjct: 245 PAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPS---VQKEGSKSPSKPSPAKSPIHTRSP 301

Query: 466 SR 471
           SR
Sbjct: 302 SR 303


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 295 PLPGRKENPLPRESARSPTLPRCQT---CPLPS*RDCQGTSSRTATLPSRKEGALPSTCP 465
           P      +P PR  +RSP+  R ++    PLPS    Q   S++ + PS  +  + +  P
Sbjct: 245 PAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPS---VQKEGSKSPSKPSPAKSPIHTRSP 301

Query: 466 SR 471
           SR
Sbjct: 302 SR 303


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 603 PVHVPCSLPPYTKRYKYQ*RSMWDRPYPVHIPKPVPYPVEKP 728
           PV+ P    P      Y+    +  P P ++PKP   P  KP
Sbjct: 138 PVYTPPVYKPTPSPPVYKKSPSYSSPPPPYVPKPTYTPTTKP 179


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 345 PNPTPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQN 506
           P+     + S TQ +  S+ Q   ++ +QS+ +  +Q  SQS   SPS+   Q+
Sbjct: 765 PSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQS 818


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 280 RRKAHPLPGRKENPLPRESARSPTLP-RCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 456
           RR  H   GR+++P P    RSP+ P R +  P P  R       R+ + P+R+  +   
Sbjct: 293 RRPTHE--GRRQSPAPSRRRRSPSPPARRRRSPSPPAR-----RRRSPSPPARRHRS--P 343

Query: 457 TCPSRQTR 480
           T P+RQ R
Sbjct: 344 TPPARQRR 351


>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
           plastid heme oxygenase (HY1) [Arabidopsis thaliana]
           GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
           GI:4530591 GB:AF132475; annotation updated per Seth J.
           Davis at University of Wisconsin-Madison
          Length = 282

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 363 SNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPS 488
           S++S+ +  +LSR+QF+  +P     R   Q +S + + SPS
Sbjct: 9   SSLSIFKNPQLSRFQFSSSSPNPLFLRPRIQILSMTMNKSPS 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,574,541
Number of Sequences: 28952
Number of extensions: 278755
Number of successful extensions: 955
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)