Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0835
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    62   1e-10
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.5  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   5.9  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    26   5.9  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   7.8  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    25   7.8  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   7.8  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
 Frame = +3

Query: 189 YRGIRYAEPPVGKLRFQPPKLIRQ-YKERVDASKEGPACPLPV---------PPTYYVDE 338
           + GIRYA+PPVGKLR++ P  +   Y    D ++    CP P           P +  DE
Sbjct: 21  FTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDE 80

Query: 339 DCLRINVYTPS-NNVSKPLPVIFYIHAG-------AFYSMTGRSDLAGPHYLLDRDLVLV 494
           DCL +N++ P+    ++  PV+++IH G         Y      DL           +LV
Sbjct: 81  DCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADG--SPAKFILV 138

Query: 495 TINYRLGSLGFISTGDSL----APGNNGLKDQVAALHWVAEEHQSF 620
           +  +RL   GF++  + L       N G  DQ   L W  +  +SF
Sbjct: 139 SPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESF 184


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 192 RGIRYAEPPVGKLRFQPPKLIRQYKERVDASKEGPACPLPVPPTYYVDEDCLRINVYTPS 371
           R +  A+ P   LR      + ++KE  ++S+ GP        + + + + LR+N+Y PS
Sbjct: 246 RSVSNAKAPTSALR-----ALLEHKE--NSSQNGPLAENFATFSGHAESNALRLNIYFPS 298

Query: 372 N-NVSKPL 392
           + + SKPL
Sbjct: 299 SESPSKPL 306


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 222 GKLRFQPPKLIRQYKERVDASKEGPACPLPVPPTYYVDEDCLRINVYTPSNNVSKPLP 395
           GK R    +L+ +Y      +K   A P PVP    +       +V  P NN+S P P
Sbjct: 496 GKPRTSVNRLVDRYNHTSSLNKVA-AAPAPVPKPVNLK------SVENPQNNISAPTP 546


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 372 NNVSKP--LPVIFYIHAGAFYSMTGRSDLAGPHYLLDRDLVLVTINYRLGSLGFI 530
           N +SK   LPV+ Y  A    ++T +  L+ P Y ++  L+ V     + ++G +
Sbjct: 7   NRISKSPILPVVSYCMASILMTLTNKYVLSSPGYNMNFLLLTVQSTVCVAAIGIL 61


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 396 VIFYIHAGAFYSMTGRSD 449
           VIFY+H GA Y  T R++
Sbjct: 140 VIFYVHGGAHYLSTVRTN 157


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 488  HQISVQQVVRPGQVAPARHGVERSGVNVKYHRERLRDIVTRS 363
            H +S +Q+  P  V   +  +  +G+N   HRE  +++V +S
Sbjct: 2115 HLVSPEQLALPDDV---KDDIRANGLNFIEHRELTKEVVAQS 2153


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 294 PACPLPVPPTYYVDEDCLRINVYTPSNNVSKPLPVIF 404
           P C +  PP   V E    I + TP N V +P   +F
Sbjct: 37  PRCRIIEPPRATVPEAVSNIIMSTPFNRVQRPKRHVF 73


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 383 EASPCDILHSRRSVLLHDGQERPGRASLL 469
           E   C  LH+  + LL  G+ER G  ++L
Sbjct: 264 ELDTCLCLHAEENALLEAGRERVGNNAIL 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,850
Number of Sequences: 5004
Number of extensions: 66473
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)