Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0835
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0418 - 17406313-17407419 35 0.054
06_01_0782 - 5848381-5849394,5851143-5851255,5851337-5851440,585... 35 0.054
07_03_1467 - 26736859-26736868,26737769-26738439 33 0.16
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879... 33 0.29
09_04_0412 + 17369935-17370873 31 0.66
09_04_0414 - 17393780-17394826 31 0.87
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 30 1.5
07_03_1465 - 26729872-26730909 30 1.5
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 30 2.0
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098... 29 2.7
09_04_0413 + 17372852-17373787 29 3.5
08_02_0996 - 23404595-23405596 29 3.5
07_01_0775 + 5976883-5978109 29 3.5
04_03_0167 - 12178587-12179203,12179243-12179375,12179540-121797... 29 3.5
09_04_0410 + 17362751-17363698 29 4.7
07_01_0447 - 3377666-3378673 29 4.7
09_04_0411 + 17366559-17367497 28 6.2
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 28 6.2
11_02_0041 - 7669692-7670312 28 8.1
09_04_0409 + 17359459-17360622 28 8.1
>09_04_0418 - 17406313-17407419
Length = 368
Score = 35.1 bits (77), Expect = 0.054
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Frame = +3
Query: 225 KLRFQPPKLIRQYK----ERVDASKEGPACPLPVPPTYYVDEDC-------LRINVYTPS 371
++ F P ++R YK ER D ++ P P P V +D + +Y P
Sbjct: 54 EIEFDMPGVLRMYKDGRVERFDGTQTVPPSPSGDPANGVVSKDVVLDPAAGISARLYLPP 113
Query: 372 N-NVSKPLPVIFYIHAGAFYSMTGRSDL 452
K LPV+ + H GAF T S L
Sbjct: 114 GVEPGKKLPVVLFFHGGAFLVHTAASPL 141
>06_01_0782 -
5848381-5849394,5851143-5851255,5851337-5851440,
5851584-5851660,5851740-5852132,5852267-5852482,
5852826-5852923,5853503-5853637,5853745-5853811,
5853999-5854094,5854555-5854683
Length = 813
Score = 35.1 bits (77), Expect = 0.054
Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Frame = +3
Query: 207 AEPPVGKLRFQPPKLIRQYKE-RVDASKEGPACPLPVPP-TYYVDED----CLRINVYTP 368
A P ++ F + QYK RV P P P T V D R VY P
Sbjct: 494 AMDPDSEVAFDFQPYLCQYKSGRVFRLGGDPTVPAGTDPVTRVVSRDIHAGAARARVYLP 553
Query: 369 SNNV--SKPLPVIFYIHAGAFYSMTGRSDLAGPHYLLDRDLVLVTINYRLGSLGFISTGD 542
++ LPV+ Y H G F +TG H L+ DLV R G++G +S
Sbjct: 554 PGAAVSTEKLPVVVYFHGGGF--VTGSPARPSTHAYLN-DLVA-----RAGAIG-VSVYY 604
Query: 543 SLAPGN---NGLKDQVAALHWVA 602
LAP N +D AA+ W A
Sbjct: 605 RLAPENPLPAAYEDAWAAVRWAA 627
>07_03_1467 - 26736859-26736868,26737769-26738439
Length = 226
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +3
Query: 357 VYTPSNNV---SKPLPVIFYIHAGAFYSMTGRS---DLAGPHYLLDRDLVLVTINYRL 512
V++P+++ S PLPV+ Y H G F +T S D + V+V++NYRL
Sbjct: 87 VFSPASSSAVESPPLPVVVYFHGGGFALLTAASSQYDALCRRLCRELRAVVVSVNYRL 144
>12_01_0904 +
8791474-8792261,8792935-8793037,8794009-8794055,
8795180-8795717
Length = 491
Score = 32.7 bits (71), Expect = 0.29
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 360 YTPSNNVSKPLPVIFYIHAGAFYSMTGRSDLAGPHYLLDR-----DLVLVTINYRLGSLG 524
Y P+ + LPVI H GAF TG +D A R D ++V + YRL
Sbjct: 148 YLPTARSGRRLPVIVQFHGGAF--ATGAADSAANDAFCRRVARLCDAIVVAVGYRLAP-- 203
Query: 525 FISTGDSLAPGNNGLKDQVAALHWVAEE 608
+S P +D V L W+A++
Sbjct: 204 -----ESRYPA--AFEDGVTVLKWIAKQ 224
>09_04_0412 + 17369935-17370873
Length = 312
Score = 31.5 bits (68), Expect = 0.66
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +3
Query: 345 LRINVYTPS---NNVSKPLPVIFYIHAGAFYSMTGRSDLAGPHYLLD-----RDLVLVTI 500
L + V+ P + K LPV+ Y H G F + +D A H L+ +++V++
Sbjct: 55 LFVRVFLPKVQDQELGKKLPVLVYFHGGGF--IIESADSATYHNYLNSAAAAAGVLVVSV 112
Query: 501 NYRLGSLGFISTGDSLAPGNNGLKDQVAALHWVAEEHQSFW 623
+YRL ++ P G D AAL W H W
Sbjct: 113 DYRLAP-------ENPLPA--GYDDSWAALQWAVSAHADDW 144
>09_04_0414 - 17393780-17394826
Length = 348
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 345 LRINVYTPSNNVSKPLPVIFYIHAGAFYSMTGRSDL--AGPHYLLDRDLVL-VTINYRL 512
+R +Y PS + +PV+ Y H GAF + + + A + L + VL V++NYRL
Sbjct: 87 VRARLYLPSFRATAKVPVLLYFHGGAFVVESAFTPIYHAYLNTLAAKAGVLAVSVNYRL 145
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -2
Query: 437 RHGVERSGVNVKYHRERLRDIVTRSIHVDSQAVFVDVVSGRDGQRAGRALFARVNAFFV 261
R GV R ++VK+H E L +V+ S ++ + +++SGR Q G + AF V
Sbjct: 404 RQGV-RKVLDVKFHPEGLPQLVSCSNEAPNELLLFNLLSGRATQLRGHNTKIQATAFAV 461
>07_03_1465 - 26729872-26730909
Length = 345
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 366 PSNNVSKPLPVIFYIHAGAFYSMTGRS---DLAGPHYLLDRDLVLVTINYRL 512
P+N + LPV+ Y H G F + S D V+V++NYRL
Sbjct: 82 PTNTAAVKLPVVVYFHGGGFVLFSAASRPYDALCRRISRGVGAVVVSVNYRL 133
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 393 PVIFYIHAG--AFYSMTGRSDLAGPHYLLDRDLVLVTINYRLGSLGFISTGDSLAPGNNG 566
P I +H G Y + LA +L + L+ +NYR GSLGF PGN G
Sbjct: 533 PTIVVLHGGPHTVYPSSYSKSLA---FLYSQGYNLLVVNYR-GSLGFGEEALQSLPGNIG 588
Query: 567 LKD 575
+D
Sbjct: 589 SQD 591
>05_03_0614 -
16206005-16206586,16207585-16207608,16209746-16209879,
16210703-16210832
Length = 289
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +1
Query: 304 LCPSLPLTTSTKTA*ESTCILLVTMSRSLSL*YFTFTP 417
LCPS PL+ + + ST LVT RS SL TF P
Sbjct: 142 LCPSTPLSPMSSVSCSSTASTLVT--RSCSLTSTTFAP 177
>09_04_0413 + 17372852-17373787
Length = 311
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 330 VDEDC-LRINVYTPSN-NVSKPLPVIFYIHAGAF 425
VD D L + V+ P+ + SK LPV+ + H GAF
Sbjct: 50 VDADTGLSVRVFLPARPDPSKKLPVLVFFHGGAF 83
>08_02_0996 - 23404595-23405596
Length = 333
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 345 LRINVYTPSNNVSKPLPVIFYIHAGAFYSMTGRSDLAGPHYL----LDRDLVLVTINYRL 512
L + +Y P + + LPV+ Y H GAF + D +YL + V++NYRL
Sbjct: 84 LAVRLYRPKHRGGR-LPVLIYFHGGAFV-VESAFDPVYHNYLNALAAKAGAIAVSVNYRL 141
>07_01_0775 + 5976883-5978109
Length = 408
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 480 LCPASSEARPGRSCPSWSRTLRRECKISQGEASRHC 373
LC S + R C S + T +R C+ S+ E RHC
Sbjct: 6 LCRESDD-EDERHCSSSTNTKKRACRESEEEDERHC 40
>04_03_0167 -
12178587-12179203,12179243-12179375,12179540-12179726,
12179800-12179963,12180016-12180234
Length = 439
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -1
Query: 336 RRRSKWEGRAEGRPGPLCSRQRVLCIAELVLGAGIVVSRPVAQRILCPYRPGTAFRDV 163
R+R +A RP L SR R + A ++LG V +PV +R PGT ++V
Sbjct: 124 RQRGIKGHKAPSRPWTLTSRVRSVA-ARIILGT--TVRKPVRRRCTWATTPGTVHKEV 178
>09_04_0410 + 17362751-17363698
Length = 315
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Frame = +3
Query: 234 FQPPKLIRQYKE-RVDASKEGPACPLPVPP-TYYVDEDC-------LRINVYTPS-NNVS 383
F+ P R YK ++D P P V T +D L + +Y P S
Sbjct: 12 FEAPAHFRIYKSGKMDRLHRPPCLPAGVDEATGVASKDVVIDAGTGLSVRLYLPKIQEPS 71
Query: 384 KPLPVIFYIHAGAFYSMTGRSDLAGPH---YLLDRDLVLVTINYRL 512
K LPV+ + H G F + S + + +V+V+++YRL
Sbjct: 72 KKLPVLVFFHGGGFLIESADSSTYHNYVNPFAAAAGVVVVSVDYRL 117
>07_01_0447 - 3377666-3378673
Length = 335
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 345 LRINVYTPSNNVSKP--LPVIFYIHAGAF 425
LR+ +Y P+N+ + LPV+ Y H G F
Sbjct: 63 LRLRMYAPANHGGEEGKLPVLVYFHGGGF 91
>09_04_0411 + 17366559-17367497
Length = 312
Score = 28.3 bits (60), Expect = 6.2
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +3
Query: 345 LRINVYTPS---NNVSKPLPVIFYIHAGAFYSMTGRSDLAGPHYLLD-----RDLVLVTI 500
L + V+ P K LPV+ Y H G F + +D A H L+ +++V++
Sbjct: 55 LFVRVFLPKVQDQETGKKLPVLVYFHGGGF--IIESADSATYHNYLNSVAAAAGVLVVSV 112
Query: 501 NYRLGSLGFISTGDSLAPGNNGLKDQVAALHWVAEEHQSFW 623
NYRL ++ P G D AAL W A Q W
Sbjct: 113 NYRLAP-------ENPLPA--GYDDSWAALQW-AVSAQDDW 143
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 126 SQSGSFLGSWMETRRGKQFQAYRGI--RYAEPP 218
S +GSF+ W RG+ A R I R+A+PP
Sbjct: 180 SSAGSFVWDWPSLARGEGIVAPRSIGRRFADPP 212
>11_02_0041 - 7669692-7670312
Length = 206
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 440 QERPGRASLLAGQRSGARHHQLQARLFRFYKHRRLP 547
+ R G A G+R G R H+ + RF++ R+P
Sbjct: 114 RRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMP 149
>09_04_0409 + 17359459-17360622
Length = 387
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 381 SKPLPVIFYIHAGAFYSMTGRSDLAGPH---YLLDRDLVLVTINYRLGSLGFISTGDSLA 551
SK LPV+ + H GAF+ + S+ + +++V+++YRL +
Sbjct: 145 SKKLPVVVFFHGGAFFIESAGSETYHNYVNSLAAAAGVLVVSVDYRLAP-------EHPL 197
Query: 552 PGNNGLKDQVAALHWVAEEHQSFW 623
P G D AAL W A Q W
Sbjct: 198 PA--GYDDSWAALQWAASA-QDGW 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,587,017
Number of Sequences: 37544
Number of extensions: 521472
Number of successful extensions: 1560
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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