Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0835
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15860.2 68418.m01856 expressed protein 33 0.14
At5g15860.1 68418.m01855 expressed protein 33 0.14
At2g02580.1 68415.m00198 cytochrome P450 family protein 31 0.55
At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SD... 31 0.96
At1g19190.1 68414.m02389 expressed protein contains similarity t... 31 0.96
At2g03550.1 68415.m00315 expressed protein similar to PrMC3 [Pin... 30 1.3
At4g37160.1 68417.m05261 multi-copper oxidase type I family prot... 29 2.2
At2g24930.1 68415.m02981 Ulp1 protease family protein contains P... 29 2.2
At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SD... 29 2.2
At1g76590.1 68414.m08912 zinc-binding family protein similar to ... 29 3.9
At4g20970.1 68417.m03036 basic helix-loop-helix (bHLH) family pr... 28 6.8
At3g26300.1 68416.m03282 cytochrome P450 family protein contains... 27 9.0
At2g23630.1 68415.m02819 multi-copper oxidase type I family prot... 27 9.0
At2g17580.1 68415.m02034 polynucleotide adenylyltransferase fami... 27 9.0
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 27 9.0
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 9.0
At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pin... 27 9.0
At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putat... 27 9.0
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 327 YVDEDCLRINVYTPSNNVSKPLPVIFYIHAGAF-YSMTGRSDLAGPHYLLDRDLVLVTIN 503
Y D+ R+++Y PSNN PV+ ++ GA+ L G L +RD+++ ++
Sbjct: 135 YGDQPRNRLDLYLPSNNDGLK-PVVVFVTGGAWIIGYKAWGSLLGMQ-LAERDIIVACLD 192
Query: 504 YRLGSLGFISTGDSLAPGNNGL 569
YR G IS D + + G+
Sbjct: 193 YRNFPQGTIS--DMVTDASQGI 212
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 327 YVDEDCLRINVYTPSNNVSKPLPVIFYIHAGAF-YSMTGRSDLAGPHYLLDRDLVLVTIN 503
Y D+ R+++Y PSNN PV+ ++ GA+ L G L +RD+++ ++
Sbjct: 135 YGDQPRNRLDLYLPSNNDGLK-PVVVFVTGGAWIIGYKAWGSLLGMQ-LAERDIIVACLD 192
Query: 504 YRLGSLGFISTGDSLAPGNNGL 569
YR G IS D + + G+
Sbjct: 193 YRNFPQGTIS--DMVTDASQGI 212
>At2g02580.1 68415.m00198 cytochrome P450 family protein
Length = 500
Score = 31.5 bits (68), Expect = 0.55
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 18 LKLIFICAIVYYADAHKNNKRQTEQKPAEPDGPV 119
L L+F+C I+ A HK + +Q P+ P P+
Sbjct: 7 LSLLFLCCILLAAFKHKKRRTNQQQPPSPPGFPI 40
>At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 296
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 270 RVDASKEGPACPLPVPPTYYVDEDCLRINVYTPSNNVSKPLPVI 401
R A KEG + TY + E+C++IN Y P +P++
Sbjct: 108 RAGAGKEGFKWDEIITETYELTEECIKINYYGPKRMCEAFIPLL 151
>At1g19190.1 68414.m02389 expressed protein contains similarity to
anther-specific and pathogenesis response protein
(PrMC3) GI:5487873 from [Pinus radiata]
Length = 318
Score = 30.7 bits (66), Expect = 0.96
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +3
Query: 327 YVDEDCLRINVYTPSNNV----SKPLPVIFYIHAGAFYSMTGRSDLAGPHY---LLDRDL 485
Y E L + +Y P N+V K +P++ Y H G F T S + + D
Sbjct: 47 YSPEKNLSLRIYLPQNSVYETGEKKIPLLVYFHGGGFIMETAFSPIYHTFLTSAVSATDC 106
Query: 486 VLVTINYR 509
+ V++ YR
Sbjct: 107 IAVSVEYR 114
>At2g03550.1 68415.m00315 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873; contains an
esterase/lipase/thioesterase active site serine domain
(prosite: PS50187)
Length = 312
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 336 EDCLRINVYTPSNNVSKPLPVIFYIHAGAFYSMTGRS 446
E L + +Y P K LP++ Y H G F T S
Sbjct: 50 EKNLSLRIYLPEKVTVKKLPILIYFHGGGFIIETAFS 86
>At4g37160.1 68417.m05261 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 541
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 219 VGKLRFQPPKLIRQYKERVDASKEGPACPLPVPPTYYV 332
V RF P L R SK PLP+ PTY++
Sbjct: 279 VASTRFTKPVLTTTASLRYQGSKNAAYGPLPIGPTYHI 316
>At2g24930.1 68415.m02981 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 926
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 72 NKRQTEQKPAEPDGPVTRSQSG-SFLGSWMETRRGKQFQAYRGIRYAEPPVGKLRFQPPK 248
N+R +KP P+ P + + + L TRRG+ + + P K+R PK
Sbjct: 516 NRRLRSRKPPSPNVPKHKKEKTLNELIQKPPTRRGRGRKPLEQPKKVPPTALKIRINKPK 575
Query: 249 LIRQYKERVDASKE 290
+ K + + +KE
Sbjct: 576 PSEETKSKAEEAKE 589
>At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 296
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 270 RVDASKEGPACPLPVPPTYYVDEDCLRINVYTPSNNVSKPLPVI 401
R KEG + TY + E+C++IN Y P +P++
Sbjct: 108 RAGTGKEGFKWEETITETYELAEECIKINYYGPKRMCEAFIPLL 151
>At1g76590.1 68414.m08912 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 245
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 205 YLMPL*AWNCFPRRVSIHEPKNEPDCERVTGPSGSAGFCSVCLL 74
+L+P+ N F SIH N+ +C S FCS CLL
Sbjct: 20 WLIPMLRANYFIP-CSIHAASNKSECNMFCLDCSSEAFCSYCLL 62
>At4g20970.1 68417.m03036 basic helix-loop-helix (bHLH) family
protein
Length = 190
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 488 HQISVQQVVRPGQVAPARHGVERSGVNVKYHRERLRDIV 372
H S + + P Q+ A + +++ VNV+ RER R++V
Sbjct: 40 HHSSTEPLTLPDQLDEAANYIKKLQVNVEKKRERKRNLV 78
>At3g26300.1 68416.m03282 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 500
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 15 LLKLIFICAIVYYADAHKNNKRQTEQKPAEPDGPV 119
LL LIF+ I+ HKN + P+ P P+
Sbjct: 6 LLSLIFVICILVAVFNHKNRRNYQRTPPSPPGCPI 40
>At2g23630.1 68415.m02819 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 541
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 219 VGKLRFQPPKLIRQYKERVDASKEGPACPLPVPPTYYV 332
V RF P L SK P+ PLP+ PTY++
Sbjct: 277 VASTRFTKPILTTTGILSYQGSKIRPSHPLPIGPTYHI 314
>At2g17580.1 68415.m02034 polynucleotide adenylyltransferase family
protein similar to SP|P13685 Poly(A) polymerase (EC
2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 757
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 57 DAHKNNKRQTEQKPAEPDGPVTRSQSGSFLGSWMETRRGKQ 179
D+ +NN ++TE P P GP ++Q S + ++ RR K+
Sbjct: 593 DSEQNNDQETEVCPRTPSGP-AKNQDQSVV-QMLKRRRSKE 631
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 155 DGDTSRKAVPGL*GHKIR*ATGRETTIPAPKTNSAIQRTR*REQRGPGLPS 307
D +T+ A L ++I GR+ + + + +TR + Q GPGLPS
Sbjct: 59 DEETALSARRNLQSYEIN---GRQLRVDFAENDKGTDKTRDQSQGGPGLPS 106
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 303 PLPVPPTYY-VDEDCLRINVYTPSNNVSKPLPVIFY 407
P P PPTYY V VY P S P P ++Y
Sbjct: 619 PPPPPPTYYAVQSPPPPPPVYYPPVTASPPPPPVYY 654
>At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 314
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 345 LRINVYTP-SNNVSKPLPVIFYIHAGAFYSMTGRSDLAGPHYLLDR-----DLVLVTINY 506
L +Y P S + +P++ Y H GAF + + H L++ +++ V++NY
Sbjct: 56 LSARIYRPFSIQPGQKIPLMLYFHGGAF--LISSTSFPSYHTSLNKIVNQANVIAVSVNY 113
Query: 507 RL 512
RL
Sbjct: 114 RL 115
>At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 599
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 297 ACPLPVPPTYYVDEDCLRINV---YTPSNNVSKPLPV 398
A PLP PP + +D + + + + PS+N P+P+
Sbjct: 18 ALPLPHPPRIPIADDSITLQIDSSFRPSSNPMPPVPL 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,582,615
Number of Sequences: 28952
Number of extensions: 384518
Number of successful extensions: 997
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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