Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0834
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0103 - 19083663-19083856,19083962-19084169,19084239-190843...    31   0.73 
12_02_0502 - 19746100-19746185,19746745-19750474                       29   3.9  
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23...    28   9.0  

>11_05_0103 -
           19083663-19083856,19083962-19084169,19084239-19084323,
           19084591-19084865
          Length = 253

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 310 KQRFQVYSPSNLPWNAIGRGSV--YFPGCKKFHGNRFRCVSH 191
           +  FQV++P   PW    RG +   F     FHG++F  V H
Sbjct: 20  QNNFQVWNPEQFPWVTWWRGQIKQRFGTQNNFHGSQFPWVFH 61


>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 268 SKVSCLENILEIAVFLFLVWVHASQQFPRETI 363
           +KV+C E I+   +F F+VWV     F  ETI
Sbjct: 243 AKVACQEPIVS-TIFDFVVWVQVPYDFTTETI 273


>05_01_0035 -
           232656-232781,233212-233322,233419-233563,233749-233882,
           234341-234412,234485-234548,234632-234699,234894-235129,
           236857-237166,237495-238460,238752-238931,239041-239346,
           239593-239727,239810-240046,240120-240308,240521-240709,
           240929-241024,241117-241323,241700-241893,242979-243216
          Length = 1400

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 504 INQHGFVYSNDIISDLLCVCIQY 436
           IN  GF+YS+  I +LL VC +Y
Sbjct: 834 INPTGFLYSDSDIQELLSVCGKY 856


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,811,026
Number of Sequences: 37544
Number of extensions: 379802
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)