Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0834
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    29   4.3  
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-li...    28   5.7  
At2g01970.1 68415.m00132 endomembrane protein 70, putative             28   5.7  

>At1g03060.1 68414.m00280 WD-40 repeat family protein /
           beige-related similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; Similar to gb|U70015 lysosomal trafficking
           regulator from Mus musculus and contains 2 Pfam PF00400
           WD-40, G-beta repeats. ESTs gb|T43386 and gb|AA395236
           come from this gene
          Length = 3601

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 11  EDEIYEYCCSLHRHYTTQIRMNLMLFFVNI 100
           E E+   CC L +  T+Q++  ++ FFV +
Sbjct: 574 EQELLSLCCLLQQPITSQLKHTILSFFVKL 603


>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 375

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 328 PTPKIKKQRFQVYSPSNLPWNAIGRGS 248
           P P    QR +  + SNLP NA+G GS
Sbjct: 185 PMPSSPSQRDESDTVSNLPHNALGEGS 211


>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 375

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 328 PTPKIKKQRFQVYSPSNLPWNAIGRGS 248
           P P    QR +  + SNLP NA+G GS
Sbjct: 185 PMPSSPSQRDESDTVSNLPHNALGEGS 211


>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 375

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 328 PTPKIKKQRFQVYSPSNLPWNAIGRGS 248
           P P    QR +  + SNLP NA+G GS
Sbjct: 185 PMPSSPSQRDESDTVSNLPHNALGEGS 211


>At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-like)
           similar to Choline monooxygenase, chloroplast precursor
           (EC 1.14.15.7) from {Amaranthus tricolor} SP|Q93XE1,
           {Beta vulgaris} SP|O22553; contains Pfam Rieske [2Fe-2S]
           domain PF00355
          Length = 422

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 302 ISSIFSKQLTLECNWKGFC 246
           +S I  ++ T++CNWK FC
Sbjct: 242 LSYICRREYTIDCNWKVFC 260


>At2g01970.1 68415.m00132 endomembrane protein 70, putative
          Length = 592

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 402 SIEAVLMHRIFYEDSLSWELLGGVNPHQK*KNSDFKYIL 286
           ++E     +++Y+D   W  +G V+   K   S+FKY L
Sbjct: 117 AVEKDYYFQMYYDDLPIWGFIGKVDKESKSDPSEFKYFL 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,803,687
Number of Sequences: 28952
Number of extensions: 329403
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)