Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0833
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    27   2.0  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    27   3.6  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.2  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   8.2  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.2  

>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 365 SMYFLYFLLLRWVDKITGHL 424
           ++YF Y L+ R +DK+ GHL
Sbjct: 304 NLYFAYALMQRAIDKLYGHL 323


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 705 EICYSNYCSLRTLNILKRCSCKSEGLFYLLLVALMSPHG 589
           +I YS YC+   ++  +R +   +GL  +     + PHG
Sbjct: 288 KISYSLYCNETLVSFFRRPAFSPDGLLLVTPAGRLRPHG 326


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 396 LSNKKYKKYMLSSAIRPVLFSIKFF 322
           L +KK+KKY +  A R V   + FF
Sbjct: 264 LGSKKFKKYQILEACRDVRMYLYFF 288


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 63  FEFDFVKLGF*ALFILITVC 4
           F F +++ GF +LFI++ VC
Sbjct: 167 FLFGYLRFGFLSLFIIMAVC 186


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 536 NRNALLLHGRNRQGGGTYPCGLIRATNS 619
           N   ++LHG N Q      CGL   T+S
Sbjct: 106 NGELIVLHGINHQAAMLTACGLFMVTSS 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,467
Number of Sequences: 5004
Number of extensions: 60313
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)