Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0833
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.54 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.54 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 515 QRLPRPSNRNALL-LHGRNRQGGGTYPCGLIRATNSK*KSPSDLQ 646
           ++LP    ++ LL L+G NR+  G Y C + R+     ++ ++LQ
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRRSEGDTAQASAELQ 416


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 515 QRLPRPSNRNALL-LHGRNRQGGGTYPCGLIRATNSK*KSPSDLQ 646
           ++LP    ++ LL L+G NR+  G Y C + R+     ++ ++LQ
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRRSEGDTAQASAELQ 416


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 390 NKKYKKYMLSSAIRPVLFSIKFF*YLHKNIDTY*HFSRLN 271
           N  Y  +MLS+++       +F+ +LHK +    +  RL+
Sbjct: 236 NHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYLERLS 275


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 390 NKKYKKYMLSSAIRPVLFSIKFF*YLHKNIDTY*HFSRLN 271
           N  Y  +MLS+++       +F+ +LHK +    +  RL+
Sbjct: 236 NHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYLERLS 275


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 415 RPPGVKGLLEPINIY 459
           RPPG    + PIN+Y
Sbjct: 28  RPPGEINSINPINVY 42


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 93  CINKLLFNNLL*HEQYLIDHSNHNCYYICTY 185
           C+NK + N+ L     +  +   NC Y   Y
Sbjct: 26  CVNKSMLNSHLKSHSNVYQYRCANCTYATKY 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,764
Number of Sequences: 438
Number of extensions: 4551
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)