Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0832
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 28 0.91
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 2.1
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 3.7
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 26 4.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 6.4
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 6.4
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 8.5
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 8.5
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 8.5
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 8.5
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 28.3 bits (60), Expect = 0.91
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 151 DSPDRVNGSSVPTDLALVNKHLEGLSVT 234
+SP VNGSS P +L V ++ E ++T
Sbjct: 605 NSPQPVNGSSPPYELVFVTRNTEEATIT 632
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 402 TGSNPDGTGSNRTGAALASRHGRGVS 479
T S+P GT S+ + ++ +S+H G+S
Sbjct: 462 TQSSPSGTNSSTSTSSTSSKHSTGIS 487
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 286 SAWGPSFSVRSGCYSRMTSRSDLRDACSPGPGRLARRNR*P 164
SA G S SVR G Y+ ++S+ D + S GP N P
Sbjct: 653 SAIGRSTSVREGRYAGISSQMDSLNMDSTGPSASNMANAPP 693
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 88 YVYGEQNLSHADHDLLEPLSRDSPDRVNGSSVPTDLALVNKHLEGLSVTSS 240
+V+GE N+ LL LS + D+ + S++P D + N HL L++ S
Sbjct: 273 FVFGE-NMDRNSSGLL--LSDELLDQYSISNIPKDESKRNSHLSILAIVDS 320
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 254 GVLQPDDVTLRPSRCLFTRA-RSVGTEEPLT 165
GVL P V +P CLF + S +EE LT
Sbjct: 66 GVLNPSSVRGKPVACLFVASLNSSRSEEELT 96
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 591 HNITELINDVEFHSQ 547
H T+++NDV+FH Q
Sbjct: 232 HRHTDIVNDVQFHPQ 246
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 582 TELINDVEFHSQVGSCYIKYVTKY 511
T L D VG C++ Y+T+Y
Sbjct: 415 TSLYRDHPVSEIVGRCFVMYITRY 438
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 123 VGVR*ILLPVNVRTVYWGLQELA*TFNDSEFSVV 22
VG R ++ ++R +W L A +FND FS++
Sbjct: 493 VGSREVIDSYDLRRGWWALFSSASSFNDLGFSLI 526
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 315 DREGGVLQVPLHGVPHFPSGRGAT 244
+R G+++ PLHG+P AT
Sbjct: 123 ERANGIIRGPLHGIPFIVKDNFAT 146
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 190 DLALVNKHLEGL-SVTSSGCST 252
D V KHLEGL +TS G +T
Sbjct: 155 DAEFVEKHLEGLRKITSRGANT 176
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +1
Query: 82 SPYVYGEQNLSHADHDLLEPLSRDSPDRVNGSSVPTDLALVNK 210
SP + L+ + + EP+ S + + +S PT + NK
Sbjct: 857 SPVLSDLSKLTGSARNTAEPVENTSAEPIENTSAPTPFEIANK 899
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,667
Number of Sequences: 5004
Number of extensions: 50550
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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