Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0832
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18620.1 68414.m02321 expressed protein                             32   0.33 
At5g08550.1 68418.m01017 expressed protein                             30   1.0  
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica...    30   1.0  
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ...    29   2.4  
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   3.1  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   3.1  
At3g06020.1 68416.m00687 expressed protein ; expression supporte...    27   9.5  
At3g03560.1 68416.m00358 expressed protein                             27   9.5  
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains...    27   9.5  

>At1g18620.1 68414.m02321 expressed protein
          Length = 978

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +1

Query: 133 LEPLSRDSPDRVNGSSVPTDLALVNKHLEGLSVTSSGCSTPTGRKMRDPMQRDLQNSTFS 312
           L+ +  +   R    + P+D + + K +    V S+  ++P GR+ R   QR LQ +   
Sbjct: 564 LQQMKPEHDKRSRPPASPSDSSKLRKQISRQPVEST--TSPGGRRSRPRDQRSLQQNDGQ 621

Query: 313 ISKETEGLDTKTSVRVRNPPGGKS 384
           +S+ +    TK    +    GGKS
Sbjct: 622 LSQMSNKSRTKIEATLSIENGGKS 645


>At5g08550.1 68418.m01017 expressed protein
          Length = 908

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +2

Query: 260 DGK*GTPCRGTCKTPPSLSAKRLKDSTPRLRFAS-ATRRAASPPGSGRNRIKP--GRNRI 430
           DGK  TP      T  S   K L  S P+ +  S A        G+ R  IKP  GR+R+
Sbjct: 21  DGKVATPSSKPTSTLSSSKPKTLSASAPKKKLLSFADDEEEEEDGAPRVTIKPKNGRDRV 80

Query: 431 KPDRSRTSFTARARCQSTCEKIFSSTKYL 517
           K         +  R  ST E+  +S+  L
Sbjct: 81  KSSSRLGVSGSSHRHSSTKERRPASSNVL 109


>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P41410 DNA
           repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1132

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 253 GCYSRMTS--RSDLRDACSPGPGRLARRNR 170
           GC +  T   R ++RDACSP P +  RR R
Sbjct: 39  GCVNSRTEKRRVNMRDACSPSPRKKKRRRR 68


>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
           (UBP23) identical to GI:11993486
          Length = 859

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 160 DRVNGSSVPTDLALVNKHLEGLS-VTSSGCSTPTGRKMRDPMQRDLQNSTFSISKETEGL 336
           D+VNGS+V  +         GL+ + S G STP     +D   ++ QN+  S  +  E L
Sbjct: 443 DQVNGSTVIKECGFGALVANGLAPLKSCGPSTPAVLTQKDLNAKETQNNAISNVEAKEIL 502

Query: 337 DTK 345
           +T+
Sbjct: 503 ETE 505


>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 214

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 378 QVLRALVGTGSNPDGTGSNRTGAALASRHGRGVSLLVKKSLVPRNI 515
           Q+   LV    +  GTG N   A  A R+ RG S   +  + PR +
Sbjct: 83  QIETGLVLESDHGSGTGMNLATALEAERYNRGESTEAEADMTPRRV 128


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +2

Query: 296 KTPPSLSAKRLKDSTPRLRFASATRRAASPPGSGRNRIKPGRNRIKPDRSRTSFTARARC 475
           ++PP  S +R++ S  R R     RR + PP   R R  P R+ I+  RSR+      R 
Sbjct: 281 RSPPRGSPRRIRGSPVRRRSPLPLRRRSPPP--RRLRSPPRRSPIR-RRSRSPIRRPGRS 337

Query: 476 QST 484
           +S+
Sbjct: 338 RSS 340


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +2

Query: 296 KTPPSLSAKRLKDSTPRLRFASATRRAASPPGSGRNRIKPGRNRIKPDRSRTSFTARARC 475
           ++PP  S +R++ S  R R     RR + PP   R R  P R+ I+  RSR+      R 
Sbjct: 288 RSPPRGSPRRIRGSPVRRRSPLPLRRRSPPP--RRLRSPPRRSPIR-RRSRSPIRRPGRS 344

Query: 476 QST 484
           +S+
Sbjct: 345 RSS 347


>At3g06020.1 68416.m00687 expressed protein ; expression supported
           by MPSS
          Length = 300

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
 Frame = +1

Query: 73  PINSPYVYGEQNLSHADHDLLEPLSRDSPDRVNGSSVPTDLALVNKHL---EGLSVTSSG 243
           P +SP      + +      LE LS  S +     ++P   +  ++     E L++ +  
Sbjct: 60  PSSSPNPSSNSDTNSGSWSFLESLSNSSSNDKEKKTLPLFQSPSSRRTLSDESLALCTES 119

Query: 244 CSTPTGRKMRDPMQRDLQNSTFSISKETEGLDTKTSVRVRNP 369
             + TG    D +  D+    FSIS E + ++T+T+    NP
Sbjct: 120 LGSETGS---DIIHEDM----FSISSELQTMETRTTSTTSNP 154


>At3g03560.1 68416.m00358 expressed protein
          Length = 436

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 232 TSSGCSTPTGRKMRDPMQRDLQNSTFSISKETEGLDTKTSVRVRNPPGGKSSGLW*EP 405
           T  G    T  ++  PM+   +N   +I ++TE      S+R  N  GG S G++ +P
Sbjct: 209 TDRGNDYQTNEQLLPPMENVTRNPYHNIMQDTE------SLRFNNQIGGGSQGIFPQP 260


>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 820

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +1

Query: 91  VYGEQNLSHADHDLLEPLSRDSPDRVNGSSVPTDLALVNKHLEGLSVTSSGCS--TPTGR 264
           VYGE+ LS    DL+    RD+  ++N SS     +   K++E  +V++ G S     G 
Sbjct: 145 VYGEK-LSPPRFDLINDSLRDNYAKLNSSSKKPIGSPAEKNVEVETVSNKGRSKLATMGA 203

Query: 265 KMRDPMQRDLQNSTFSISKETEG 333
           +    +   L  +T +   E EG
Sbjct: 204 RKEAKVSLSLSGATGNGDLEVEG 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,150
Number of Sequences: 28952
Number of extensions: 299850
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)