Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0831
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    27   2.7  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   6.3  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    26   6.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.3  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   8.3  

>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   LKKTTRLRSVFRTLLNSIWPHTSEMTFMKGL 96
           L K TR R  FRTL+++I P    +   KGL
Sbjct: 499 LFKYTRARKGFRTLIDAIQPFVETLNEGKGL 529


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 507 LRARRKVYNLWRRNSIYDILNGNNFC*ATCDVERVALASA 388
           L A  K Y LWR ++    LN  N       +  V L SA
Sbjct: 110 LSAEIKTYGLWRVSAALSFLNDKNIVHGNLQMSSVYLNSA 149


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 149 PVKAISIGKKKVDKYVRDKP 90
           PV +I++  K  DKY  DKP
Sbjct: 481 PVNSIAVMAKVADKYTTDKP 500


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 28   SVFRTLLNSIWPHTSEMTFMKGLSRTYLSTFFLPMLIALTGYFSF 162
            S+ ++LL S+  H SEM  +KG++   L  F+ P  + +    SF
Sbjct: 1168 SILKSLLYSMVQHDSEMKKIKGIA---LMNFYKPKKVPIHVVQSF 1209


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -3

Query: 149 PVKAISIGKKKVDKYVRDKPFMNVISEVCGQIEFNNVLKTDLNLVV 12
           P K   +G   +D   R KP  N+++ +  + EF  ++  D N+++
Sbjct: 29  PTKRNVVGICAMDAKARSKPCRNILNRIIAEGEFEAIVFGD-NMIL 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,560
Number of Sequences: 5004
Number of extensions: 49361
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)