Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0831
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-9|AAD12845.2|  328|Caenorhabditis elegans Serpentine re...    29   3.4  
AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF125459-9|AAD12845.2|  328|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 22 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 221 RAFYASYHFNINYEFIKNVRFTFNR 295
           +A+YA+Y++N+ ++ I  +  +FNR
Sbjct: 114 KAYYATYNYNLAFKTISQIVISFNR 138


>AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical
           protein T17A3.7 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 273 MYDLLLIALNRLTFRRNKYY*NNHRCR*C*LNSPFGSIGHSQERRVLRHM*LNKSCCHLK 452
           +YD++L  L  L FRR   + N H  R   +      + +  E R+ +   LN+ C  LK
Sbjct: 142 VYDIMLQELKDLKFRRLHIWANCHLQR-VPMKLEDLLVSNISEMRIDKSFPLNQLCLFLK 200

Query: 453 YH-KWSSDAIDYTLSDAP 503
           +    S+D ++Y   + P
Sbjct: 201 HWINGSNDRLEYLEMNLP 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,390,046
Number of Sequences: 27780
Number of extensions: 270705
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)