Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0831
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 619 IHYTMFNIK-ISLVFNLRRRI 560
           I Y+  N   I +VFNLRRR+
Sbjct: 193 IEYSTGNFTCIQIVFNLRRRL 213


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 203 NQRNAWRAFYASYHFNINY 259
           N+RN W   +  +HF   Y
Sbjct: 420 NRRNPWFVEFWEHHFQCRY 438


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 694 RSQDCTERETRHKNYEYVKLEQIFKI-HYTMFN 599
           RSQD TERET  +      L   +K  +Y  +N
Sbjct: 66  RSQDRTERETSKEPKIISSLSNNYKYSNYNNYN 98


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 694 RSQDCTERETRHKNYEYVKLEQIFKI-HYTMFN 599
           RSQD TERET  +      L   +K  +Y  +N
Sbjct: 66  RSQDRTERETSKEPKIISSLSNNYKYSNYNNYN 98


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 109 LSTFFLPMLIALTGY 153
           + +FFLPML+ L  Y
Sbjct: 204 MGSFFLPMLVMLYVY 218


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 703 ISYRSQDCTERETRHKNY 650
           IS+  ++   R++R KNY
Sbjct: 253 ISWHQKELVRRDSRRKNY 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,629
Number of Sequences: 438
Number of extensions: 3435
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)