Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0830
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 28 1.4
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 4.2
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 5.5
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 25 7.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.3
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 7.3
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.7
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 9.7
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +3
Query: 321 RRKRFR*RLPTGTSWWKASTKRRKTSTVYISRQFVRRYALPEGAAPETVESRLSSDGVLP 500
R+ + R T T KA TK+ K S+Q + +P A +S + S V+P
Sbjct: 492 RKSKIRSFYETATVKAKAPTKKSKVKP---SKQEESKVVVPSNAKA-VKKSVVPSSPVVP 547
Query: 501 SPRRGRYPTPSRERERCPLYRPGPV 575
SPR+ + S + + + GP+
Sbjct: 548 SPRKATNKSLSMDVSKGNAFENGPL 572
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 625 LFSASWVPSLWSLISLR 575
L+S+SW+P+L L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 191 ACPVLSEDYFRPWRQLAAAS 250
+CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 7.3
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 345 LPTGTSWWKASTKRRKTSTVYISRQFV--RRYALPEGAAPETVESRLSSDGVLPSPRRGR 518
LPT T WK S ++ TS+ S Q V R++A P + + ++S G LP G
Sbjct: 23 LPTYTVHWKCSIQQANTSSA-SSNQTVQPRQHAAP---SSDRIKSLPEFKGSLPELYSG- 77
Query: 519 YPTPSRERERCPLYRPGPVRKE 584
Y + ++ Y P V E
Sbjct: 78 YLEANSDKSLFYTYAPAVVDSE 99
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 197 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 304
P SED P + L A ++ +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.4 bits (53), Expect = 7.3
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Frame = +3
Query: 195 VQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI--WTCSTSRRKRFR*RLPTGTSWW 368
+ C+ S + +V +AP P R S +S+ + S ++R+ R+ + +++
Sbjct: 253 ISCASSCPSTPDEQKNFFIVGNAPQQTPARPSLRSVPSYPSSNNQRRPSASRVRSFSNYV 312
Query: 369 KAST----KRRKTSTVYISRQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYP 524
K+S + S I R+ ++R + + T+ S+L L + R P
Sbjct: 313 KSSNVVNPSLSQASLEIIPRKSMKRDSNAQNDGTSTMTSKLKPSVGLSNTRDAPKP 368
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 192 PVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 302
PVQ SP TSD+ D +L+ + P S+SI
Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 628 YLFSASWVPSLWSLISLRTGPGLYNGHLSLSLDGVGYLP 512
Y A+ + + LR+G + H++ SL G+GYLP
Sbjct: 1036 YFHQAACAKGIGEYVHLRSGMPCHL-HVTSSLYGLGYLP 1073
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -2
Query: 567 PVCTMGTFLSPLTASGTF---LGAVMVEPRLMTAAIPQSQAPRL 445
P + FL+P+T SGTF A + L A S P+L
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVPQL 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,320
Number of Sequences: 5004
Number of extensions: 53965
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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