Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0830
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0219 - 28474661-28475146,28475979-28476644 36 0.022
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 30 1.4
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 30 1.9
04_04_0783 - 28040828-28041615,28041942-28043589 30 1.9
02_01_0461 - 3328662-3329087,3329124-3329201,3329370-3329597,333... 30 1.9
11_06_0611 + 25461469-25461655,25461670-25462238 29 3.3
06_03_0612 + 22735613-22735643,22735747-22735849,22737154-227375... 29 3.3
12_01_0716 - 6300877-6301086 29 4.3
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558... 29 4.3
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 28 5.7
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 28 5.7
01_06_0861 - 32528419-32529102 28 5.7
09_04_0138 - 15021764-15021953,15023112-15023464,15023878-150240... 28 7.6
05_01_0316 + 2476689-2477030,2477164-2477283,2477742-2477819,247... 28 7.6
03_02_0478 + 8775892-8776377 28 7.6
01_05_0490 + 22672241-22674679 28 7.6
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 36.3 bits (80), Expect = 0.022
Identities = 37/149 (24%), Positives = 56/149 (37%)
Frame = +3
Query: 165 PRTTCWLPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*R 344
P + P P SP T+S R + ++P P TS+ +W
Sbjct: 79 PPLSATTPHPPPPSPATSSSRTATATATATPTSPTPTPPPTSATLLWP------------ 126
Query: 345 LPTGTSWWKASTKRRKTSTVYISRQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYP 524
P T + +R+T V + R R+A AA + ++ V P P P
Sbjct: 127 RPRPTKEEEGEGLQRRTDAVLVKRLRRARFAAWTSAALHKFDFDDAAPTVPPPPPATMIP 186
Query: 525 TPSRERERCPLYRPGPVRKEIKDQSEGTQ 611
P+ PL+ P P K K++ EG Q
Sbjct: 187 PPTVTATITPLWPPPPPTK--KEEHEGLQ 213
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2
Query: 345 VFTEISSGEKCCTSRLTWNLSLSAFMLEPRSRD 247
+F ++S GE+C ++ T+N+ +SA + R+ D
Sbjct: 401 LFEKMSKGEECLPNQDTYNIIISAMFMRKRAED 433
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 426 RRYALPEGAAPETVESRLSSDGVLPS--PRRGRYPTPSRERERCPLYRPGPVRKEIKDQS 599
RR ALP G+ PE ESR S V + RGR R R R P R + +D+S
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPPTKRKEVGYVQFEDES 164
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 540 RERCPLYRP--GPVRKEIKDQSEGT 608
R++CPLYRP PV E+ + EGT
Sbjct: 280 RDKCPLYRPDGSPVDPEVDKKVEGT 304
>02_01_0461 -
3328662-3329087,3329124-3329201,3329370-3329597,
3330181-3330204
Length = 251
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 354 GTSWWKASTKRRKTSTVYISRQFVRRYALPEGAAPETVESRLS 482
G SW K R+T TV SRQ +R+ +P+ TV+ S
Sbjct: 118 GASWTKVREDARETKTVTQSRQSLRK-MMPKSRCSRTVKDETS 159
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +3
Query: 423 VRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERERCPLYRPGPVRKEIKDQSE 602
+ A P P + SR S S P P R R RC +R G +E+ +
Sbjct: 164 IHAVAPPRRPPPPRLPSRASPLAPAGSDGMAPPPLPGRRRRRCYTHRNGEREREL--ERN 221
Query: 603 GTQDAEN 623
G ++ EN
Sbjct: 222 GEREREN 228
>06_03_0612 +
22735613-22735643,22735747-22735849,22737154-22737511,
22737592-22738033,22738146-22738189,22738293-22738340
Length = 341
Score = 29.1 bits (62), Expect = 3.3
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Frame = +3
Query: 150 SVCR*PRTTCWLPSPVQCSPKTTSDRGDNS----RLHLVTSAP--A*RPTRTSSKSIWTC 311
SV R P+ + + V C +S + DNS R H + + P + RPT T + + +
Sbjct: 41 SVARRPKPSLDVSKSV-CGLDLSSVK-DNSAKPPRRHSIQTKPGVSPRPTPTGTITPVSL 98
Query: 312 STSRRKRFR*RLPTGTSWWKASTKRRKTSTVYISRQFVRRYALPEGAAPETV 467
SRR + + T S ST RRK ST+ + ++ + L E A+ ++
Sbjct: 99 VRSRRSDSQGKFDTPISEVSMSTARRKFSTLSSTSYWMTQIRLAEAASKHSI 150
>12_01_0716 - 6300877-6301086
Length = 69
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 369 KASTKRRKTSTVYISRQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERER 548
+A+ RR+ + + + FV AL E + L G+LP+P YPT + +
Sbjct: 6 RATGGRRRLAALLVLMLFVMAAALQEAPVMASAARVLLQSGLLPTP----YPTCNPGQYS 61
Query: 549 CP 554
CP
Sbjct: 62 CP 63
>10_02_0129 +
5584585-5584732,5586567-5586968,5587038-5587106,
5587181-5587234,5587309-5588214,5588313-5590283,
5590833-5591235,5591845-5591857
Length = 1321
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/55 (41%), Positives = 26/55 (47%)
Frame = -3
Query: 464 SLRRRAFRQRVTSDELP*NIHRARLSSLRACLPPRCTRRQSSPKSLPARSAARPD 300
S RR+A RQR+T DE AR S R LPP RQ+ AAR D
Sbjct: 91 SARRKAHRQRLTPDER--QELNARRRSARQSLPP--NERQALLDRRNTSDAARRD 141
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 601 SLWSLISLRTGPGLYNGHLSLSLDGVGYL 515
S W +S L+ GH+S+++ G+GYL
Sbjct: 240 SEWEEVSSINNYALFMGHMSMAVKGLGYL 268
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 368 PPRCTRRQSSPKSLPARSAARP 303
P R TRR++SP S PA AA P
Sbjct: 94 PARSTRRKTSPGSSPASVAAAP 115
>01_06_0861 - 32528419-32529102
Length = 227
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 523 GYLPRRGDGRTPSDDSRDSTVSGAAPSGS 437
GYL R DG+ P +R S++ G A +G+
Sbjct: 87 GYLGARADGQKPLFSARRSSILGGAAAGA 115
>09_04_0138 -
15021764-15021953,15023112-15023464,15023878-15024066,
15024171-15024299,15024469-15024642
Length = 344
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 442 GSA*RRTNCLEIYTXXXXXXXXXXFHHDVPVGSLHRNLFRREVLHVQIDLELVLVGLYAG 263
GSA + N ++ Y + P S R+L VLH + D+ +L L+
Sbjct: 219 GSAKKYANAVQAYVDVRDVAAAHVRVFEAPEAS-GRHLCAERVLHRE-DVVHILGKLFPE 276
Query: 262 AEV-TRCSRELSPRSE 218
V TRCS E++PR +
Sbjct: 277 YPVPTRCSDEVNPRKQ 292
>05_01_0316 +
2476689-2477030,2477164-2477283,2477742-2477819,
2477956-2478132,2478317-2478394,2478694-2478866,
2478994-2479149,2479573-2479633,2479831-2480049
Length = 467
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 553 GHLSLSLDGVGYLPRRGDGRTPSDDSRDSTV 461
G L+ LDG+ ++ RGDGR + +D T+
Sbjct: 279 GVLTGHLDGITFIDSRGDGRYFISNCKDQTI 309
>03_02_0478 + 8775892-8776377
Length = 161
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 411 SRQFVRRYALPEGAAPETVESRLSSDGVL 497
S +F+RR+ LP+ A PE +++ + +GVL
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVL 140
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 586 ISLRTGPGLYNGHLSLSLDGVGYLPRRGDGRTPSDDSRDSTVSGAAPSG 440
ISL++G + N L G L R GDG + S + + +GAA G
Sbjct: 88 ISLKSGWDVVNLFLVAFAILCGLLGRAGDGESSSGSASTAAAAGAASEG 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,030,403
Number of Sequences: 37544
Number of extensions: 431556
Number of successful extensions: 1697
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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