Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0830
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 39 0.003
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 34 0.12
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 33 0.27
SB_32739| Best HMM Match : PA (HMM E-Value=0.19) 31 0.63
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 31 0.63
SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3) 31 0.83
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 31 0.83
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 30 1.5
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 30 1.5
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 30 1.9
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 29 4.4
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.4
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06) 28 5.9
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_33817| Best HMM Match : RVT_1 (HMM E-Value=0.1) 28 7.7
SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +3
Query: 414 RQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERER 548
++F R + LPEG PE V SR+S+ G L R P P E E+
Sbjct: 48 KEFRRTFTLPEGIDPENVTSRISNHGHLHIEARKALPKPEAELEK 92
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 272 KADKDKFQVNLDVQHFSPEEISVK 343
KA +DKF + +DV F PE I V+
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQ 115
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 278 DKDKFQV-NLDVQHFSPEEISVKTADGYI 361
D DKFQ+ LDV+ F PEEI+ K +G I
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKI 30
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +3
Query: 381 KRRKTSTVYISRQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERE 545
+R ++ + S++F R Y LPEG ++ +R++ DG+L + P + E +
Sbjct: 36 QRHESEEGFDSKEFRRCYNLPEGVDESSISTRIAEDGMLHVEALKKSPPATTENK 90
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 405 YISRQFVRRYALPEGAAPETVESRLSSDGVL 497
+ +RQF R + LP +T+ RL DGVL
Sbjct: 137 FTARQFNRHFVLPREVDMDTLVPRLGKDGVL 167
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 278 DKDKFQVNLDVQHFSPEEISVK 343
D KF + LDV F PEE+ VK
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVK 117
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 405 YISRQFVRRYALPEGAAPETVESRLSSDGVL 497
Y + +F R Y LP+G TV SR++ DG+L
Sbjct: 78 YETSEFHRSYNLPDGVDVSTVSSRITGDGLL 108
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 257 LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYI 361
L ++ + + DK ++ LDV+++ PEEIS+K G I
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRI 64
>SB_32739| Best HMM Match : PA (HMM E-Value=0.19)
Length = 319
Score = 31.5 bits (68), Expect = 0.63
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 192 PVQCSPKTTSDRGDNSRLHLVTSAP---A*RPTRTSSKSIWTCSTS 320
P+ P++ R D R L S P A T T S S+WTCS S
Sbjct: 273 PLDLKPRSNVMRVDEGRYELKLSCPFHCAFSHTLTDSHSLWTCSNS 318
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 31.5 bits (68), Expect = 0.63
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +3
Query: 342 RLPTGTSWWKASTKRRKTSTVYISRQFVRRYALP-EGAAPETVESRLSSDGVLPSPRRGR 518
R +G SW + RRK S ++R R + P E A E V+ R +D + P+
Sbjct: 940 RAISGRSWQDFESSRRKKSMELLNRPPSRTFETPAEPAKVEVVKLRRPADYI---PKHHG 996
Query: 519 YPTPSRERERCPLYRPGPVRKEIKDQSEGTQDAENK 626
ER P YR P E Q +Q +++
Sbjct: 997 SQELLNERPTSPTYRAKPQTYETHVQPMQSQPIQSE 1032
>SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)
Length = 420
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3
Query: 495 LPSPRRGRYPTPSRERERCPLYRPGPVRKE 584
LP P R RY R R R PLYR PVRK+
Sbjct: 55 LPRPPRIRYDINRRRRWRIPLYRE-PVRKK 83
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 245 ASRDLGSSIKADKDKFQVNLDVQHFSPEEISVK 343
A+++ S+ D KF + LDV F PEE+ VK
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVK 45
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 250 RCSRELSPRSEVVFGEHWTGDGSQHVVR 167
R SR SP + FG TGDG QH+V+
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127
>SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 500 ITAPRKVPDAVKGERKVPIVQTGSR 574
+T+ RKVP+ V +RKVP + TG R
Sbjct: 42 VTSQRKVPNMVTSQRKVPNMVTGRR 66
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 494 STITAPRKVPDAVKGERKVPIVQTGSR 574
+T+T+ RKVP+ V RKVP T R
Sbjct: 90 NTVTSQRKVPNMVSSRRKVPNTVTSRR 116
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 494 STITAPRKVPDAVKGERKVPIVQTGSR 574
+T+T+ RKVP+ V RKVP + T R
Sbjct: 110 NTVTSRRKVPNMVTSRRKVPNMVTSRR 136
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 500 ITAPRKVPDAVKGERKVPIVQTGSR 574
+T+ RKVP+ V +RKVP + T R
Sbjct: 32 VTSRRKVPNMVTSQRKVPNMVTSQR 56
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 500 ITAPRKVPDAVKGERKVPIVQTGSR 574
+T+ RKVP+ V R+VP + TG R
Sbjct: 222 VTSRRKVPNMVTSRREVPNMVTGQR 246
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 500 ITAPRKVPDAVKGERKVPIVQTGSR 574
+T+ RKVP+ V RKVP + T R
Sbjct: 2 VTSQRKVPNMVPSRRKVPNMVTSQR 26
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 500 ITAPRKVPDAVKGERKVP 553
+T+ RKVP+ V G RKVP
Sbjct: 52 VTSQRKVPNMVTGRRKVP 69
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 414 RQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERE 545
++F R +ALPEG V++R+S+ G L P P E
Sbjct: 48 KEFRRTFALPEGVEASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 275 ADKDKFQV-NLDVQHFSPEEISVKTADGYI 361
A+++K ++ LDV+ + PEEIS K +G++
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFV 31
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 414 RQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERE 545
++F R +ALPEG V++R+S+ G L P P E
Sbjct: 48 KEFRRTFALPEGVEASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 275 ADKDKFQV-NLDVQHFSPEEISVKTADGYI 361
A+++K ++ LDV+ + PEEIS K +G++
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFV 31
>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = +3
Query: 255 TSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTSWWKASTKRRKTSTVYISRQFVRRY 434
T P RPT SKS + SR R T + +++ R++S+ I ++ R
Sbjct: 452 TVRPKVRPTALPSKSGSRSAASRTSRSSRSRITSSGSTRSNRSNRRSSSASIDQE-TRSS 510
Query: 435 ALPEGAAPETVESRLSSDG-VLPSPRRGRYPTPSR 536
G E+ SDG VL RGR P++
Sbjct: 511 RRTRGRGVSYAETDSDSDGEVLTVSSRGRVRRPTQ 545
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 275 ADKDKFQV-NLDVQHFSPEEISVKTADGYI 361
A+++K ++ LDV+ + PEEIS K +G++
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFV 31
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 414 RQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERE 545
++F R + LPEG V++R+S+ G L P P E
Sbjct: 48 KEFRRTFTLPEGVEASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 414 RQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERE 545
++F R + LPEG V++R+S+ G L P P E
Sbjct: 282 KEFRRTFTLPEGVEASNVKTRISNHGQLHIEAMKALPGPDGGEE 325
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 284 DKFQV-NLDVQHFSPEEISVKTADGYI 361
D+ ++ LDV+ + PEEIS K +G++
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFV 265
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 275 ADKDKFQV-NLDVQHFSPEEISVKTADGYI 361
A+++K ++ LDV+ + PEEIS K +G++
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFV 31
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 414 RQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERE 545
++F R + LPEG V++R+S+ G L P P E
Sbjct: 48 KEFRRTFTLPEGVEASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 414 RQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTP 530
++F R + LPEG V++R+S+ G L P P
Sbjct: 49 KEFRRTFTLPEGVEASNVKTRISNHGQLHIEAMKALPEP 87
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 642 LQNHPTYFRHPGFPRSGP*SPCERDPVCTMGTFLSPLT 529
++ H F +P F SP + DPVCT +S T
Sbjct: 2096 MERHENEFTNPAFVLPSSSSPTDTDPVCTCEASVSLTT 2133
>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 28.3 bits (60), Expect = 5.9
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +3
Query: 168 RTTCWLPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTS--SKSIWTCSTSRRKRFR* 341
RT+ P PV+ S + S R R L TSA P RTS + S + ST R F
Sbjct: 495 RTSSERPLPVRTSAERPSLRTSAERPSLRTSAERPLPVRTSTDTSSSFRSSTERPFSFHA 554
Query: 342 RLPTGTSWWKASTKRRKTSTVYISRQFVR 428
S W T +T ++ S +F R
Sbjct: 555 DTERRESPW---TSTERTLSLRTSSEFDR 580
>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
Length = 353
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -1
Query: 274 LYAGAEVTRCSRELSPRSEVVFGE----HWTGDGSQH 176
LY+ V + +RE+ R ++ F E HWTG G H
Sbjct: 83 LYSSGNVNQAAREMGKR-DIDFMEISETHWTGQGKMH 118
>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = -3
Query: 473 RFHSLRRRAFRQRVTSDELP*NIHRARLS--SLRACLPPRCTRRQSSPKS---LPARSAA 309
R SL R+ R + + LP N+ +L SL+ PPR RR+ P+S P RS
Sbjct: 126 RHQSLPRKQQRNPLPKNLLPKNLLPRKLQNPSLQRSQPPRNLRRKPPPRSPLKRPPRSKV 185
Query: 308 RP 303
P
Sbjct: 186 LP 187
>SB_33817| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 291
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 501 SPRRGRYPTPSRERERCPLYRPG 569
S + GR+PT +E + CP+Y+ G
Sbjct: 77 SIKTGRFPTRWKEAKVCPIYKAG 99
>SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 432 YALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERERCPLYRPGPVRKEIKDQSEGTQ 611
Y P P T ++ ++D V +P + PT E P+Y GP ++
Sbjct: 386 YDCPPRTVPSTGDAPANNDPVSNAPMMNKGPTSDASPESVPVY-DGPTNNSSANEDPSAT 444
Query: 612 D 614
D
Sbjct: 445 D 445
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +3
Query: 471 SRLSSDGVLPSP---RRGRYPTPS--RERERCPLYRPGPVR 578
SR D PSP RR + P+PS R R R P P P+R
Sbjct: 906 SRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMR 946
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,410,029
Number of Sequences: 59808
Number of extensions: 470450
Number of successful extensions: 1661
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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