Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0830
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    33   0.13 
At4g35870.1 68417.m05094 expressed protein                             30   1.6  
At2g20360.1 68415.m02377 expressed protein                             29   2.1  
At5g43100.1 68418.m05261 aspartyl protease family protein low si...    29   2.7  
At3g48680.1 68416.m05316 bacterial transferase hexapeptide repea...    29   3.6  
At5g18190.1 68418.m02135 protein kinase family protein contains ...    28   4.8  
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS...    27   8.4  
At1g26140.1 68414.m03191 hypothetical protein                          27   8.4  

>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 4/139 (2%)
 Frame = +3

Query: 186 PSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTSW 365
           P PV  +PK  + + DN+           RP  TS +     S  RR     R  +    
Sbjct: 185 PKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRRSPLPRRGLSPRRR 244

Query: 366 WKASTKRRKTSTVYISRQFV---RRYALP-EGAAPETVESRLSSDGVLPSPRRGRYPTPS 533
              S  RR+  +    R      RR A P  G +P +   R        SPRR R  +P 
Sbjct: 245 SPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIR-GSPV 303

Query: 534 RERERCPLYRPGPVRKEIK 590
           R R   PL R  P  + ++
Sbjct: 304 RRRSPLPLRRRSPPPRRLR 322


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 369 KASTKRRKTSTVYISRQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRYPTPSRERER 548
           K   K RK   + +  +    YAL        +E+ L  + +  SPR G     S++   
Sbjct: 591 KKIQKFRKNDMLQLVPEQNEEYALENQEPSSNLETPLLPENMFESPRFGDIEPMSQDLSE 650

Query: 549 CPLYRPGPVRKE 584
            P+ R  P+ K+
Sbjct: 651 YPISRTSPIPKQ 662


>At2g20360.1 68415.m02377 expressed protein
          Length = 402

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -1

Query: 625 LFSASWVPSLWSLISLRTGPGLYNGHLSLSLDGVGYLPRRGDGRTPSDDSRDSTVSGA 452
           ++S+S + SL+ + +   G        SL+  GVG+L R+G G   S     +TV GA
Sbjct: 19  IYSSSSLRSLYGVSNHLNGTDNCRYSSSLATKGVGHLARKGTGGRSSVSGIVATVFGA 76


>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 426 RRYALPEGAAPETVESRLSSDGVLPSPRRGRYPT 527
           RR A PE  AP +  S+  S  + PSP     PT
Sbjct: 422 RRLAAPESPAPTSPISQNKSSNISPSPATSESPT 455


>At3g48680.1 68416.m05316 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats);
           ferripyochelin binding protein - Methanobacterium
           thermoautotrophicum, EMBL:AE000918.1
          Length = 256

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 387 RKTSTVYISRQFVRRYALPEGAAPETVESRLSSDGVLPSPRRGRY 521
           +++ T  +S   +RRY   E  A  T E+      V PSP R ++
Sbjct: 10  KRSITSAVSSNLIRRYFAAEAVAVATTETPKPKSQVTPSPDRVKW 54


>At5g18190.1 68418.m02135 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 691

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 220 QTVETTRGCIS*PRLQHKGRQG 285
           Q   T  GC   P + HKGRQG
Sbjct: 185 QVYNTLNGCYGVPAVHHKGRQG 206


>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
           (RSP31) identical to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 264

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 441 PEGAAPETVESRLSSD-GVLPSPRRGRYPTPSRERERCPLY 560
           P  +       R S D G  PSP +GR P+P   R R P Y
Sbjct: 178 PRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEY 218


>At1g26140.1 68414.m03191 hypothetical protein
          Length = 162

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 247 CSRELSPRSEVVFGEHWTGDG 185
           C + L P  E V  EHW+G+G
Sbjct: 94  CGKTLQPTMEDVKEEHWSGNG 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,634,809
Number of Sequences: 28952
Number of extensions: 313499
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)