Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0829
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 31 0.088
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 0.82
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 27 1.4
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 27 1.9
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 3.3
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 26 3.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 4.4
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 4.4
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 5.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 5.8
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 7.7
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 31.5 bits (68), Expect = 0.088
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -2
Query: 466 PAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGS 299
P+Q + S++P V+T ++F T T + TPTP + ++ ++ ++CGS
Sbjct: 917 PSQYVCSDGSLSPNTVTTTKATTTFTPTPTT---TTTPTPTTTSATSTNVIAQCGS 969
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 28.3 bits (60), Expect = 0.82
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 501 PQVKVPLLPCEHYYLHTKPID 563
P++ VPLLP E+++LH+ +D
Sbjct: 220 PRIAVPLLPHEYHHLHSLLLD 240
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.1
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = -2
Query: 478 LAQKPAQLIK*SHSIAPFVVS--TPDTLSSFDSTAVT---EQSSITPTPLSVASLIRDIQ 314
L+ A I S S +P S T SSF ++ V+ +QSS + L+ +S
Sbjct: 49 LSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTS 108
Query: 313 SKCGSPTPSPGIHRPPSTSSTFSIGNNS 230
S SPT S H S+SS+ ++S
Sbjct: 109 SSSASPTSSSSSHALSSSSSSLVASSSS 136
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 1.1
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = -2
Query: 514 TFTCGRANCPTCLAQKPAQLIK*SH--SIAPFVVSTPDTLSS-FDSTAVTEQSSITPT-- 350
T G + P+ + P+ I S S+ S P + SS F S+ T S I+ +
Sbjct: 510 TLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSI 569
Query: 349 PLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 230
P + +S+ + S SP+ + STSSTFS + S
Sbjct: 570 PSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTS 609
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 417 ETTNGAIECDYFINCAGFWARQVGQLARPQV 509
ET E NC G WA ++G + P V
Sbjct: 173 ETVEETPEASVVFNCTGLWASKLGGVEDPDV 203
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 1.9
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = -2
Query: 436 IAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 257
+A F +T TLS +S E +S PTP S + L SP P+ I P
Sbjct: 189 LAVFKETTSSTLSHGNSVEADEINSFNPTPFSSSPL----HFTNSSPNPNSDIVTPDKQL 244
Query: 256 STFSIGNNS*HF-FGVTKSQSMLHDT 182
S H F T + HD+
Sbjct: 245 DVVSEHARYKHLPFTATLRKKSPHDS 270
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 297 GDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDKVSGVETTNGAIE 440
GDP ++ S+ E+TD V ++ + T + ++ + TNG IE
Sbjct: 331 GDPPIVLESIAFESTDSLTVVWKESTRTVFETVPWRILSSQATNGLIE 378
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 496 ANCPTCLAQKPAQLIK*SHSIAPFVV-STPDTLSS 395
A CP C+ ++ + K + + PF + PDTL S
Sbjct: 207 AKCPYCMTERFGVIYKPNPKLTPFSFNNNPDTLPS 241
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 4.4
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -2
Query: 439 SIAPFVVSTPDTLSSFDSTAVTEQSSIT--PTPLSVASLIRDIQSKCGSPTPSPG-IHRP 269
S+AP P SS A++ SS++ P P AS+ + P P G + P
Sbjct: 879 SMAPVRSPFPGA-SSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHP 937
Query: 268 PSTSST 251
P+ S T
Sbjct: 938 PTASGT 943
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2
Query: 142 LVLANNSEPHC 110
+VLAN+SEPHC
Sbjct: 2113 MVLANDSEPHC 2123
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 138 TRDRMTVYRRMKSQSVSWSIDCDLVTPK 221
+ D T ++ K +SVSW D DLV K
Sbjct: 493 SNDEKTGNKKRKKKSVSWKPDNDLVQVK 520
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 406 CLEWKLQMVQSSVITLSTVRAF 471
CL W L + VIT ST + F
Sbjct: 104 CLRWLLHRIPGGVITWSTYKLF 125
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 445 SHSIAPFVVST-PDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRP 269
SHS+ ++ T D F + +T+ S S +S+++ SPT + H
Sbjct: 199 SHSLHDILLDTNDDDHFPFTQSPLTKTKSFNDALTSSSSILKPCMPSIASPTSNRLSH-A 257
Query: 268 PSTSSTF 248
PST + F
Sbjct: 258 PSTPNLF 264
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 376 TEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 251
T S TP +PL V S + + +PTP+P ++ SST
Sbjct: 591 THSSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESST 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,657
Number of Sequences: 5004
Number of extensions: 51621
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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