Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0829
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 76 2e-14
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 52 2e-07
AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical... 52 2e-07
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 36 0.020
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 33 0.19
U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical pr... 32 0.25
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 31 0.57
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 31 0.76
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 31 0.76
AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical ... 30 1.0
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 29 1.7
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 1.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 1.7
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 1.7
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 1.7
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 1.7
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 29 2.3
Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical pr... 29 3.1
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 3.1
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 29 3.1
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 3.1
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 3.1
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 4.0
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 4.0
AL023856-2|CAA19567.1| 327|Caenorhabditis elegans Hypothetical ... 28 4.0
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 28 5.3
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z98877-1|CAB11569.2| 343|Caenorhabditis elegans Hypothetical pr... 27 9.3
U70854-14|AAB09153.1| 81|Caenorhabditis elegans Nematode speci... 27 9.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 9.3
U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeo... 27 9.3
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 27 9.3
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 27 9.3
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 27 9.3
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 27 9.3
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 75.8 bits (178), Expect = 2e-14
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Frame = +3
Query: 45 LAQSSIRLLKELEARGRPTGWKQCGSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVT-PK 221
+AQ+S+ L L + + +CG LA + + RRM S+ V + +L+
Sbjct: 82 IAQASLDLYSHLATTCK-FRYIKCGRTYLASSMANEILLRRMYSRGVVHNDKVELLDCQS 140
Query: 222 KCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDD 401
+ E +P L EDV L+ P D DP LC L A D G + E V V D+
Sbjct: 141 EMLERWPFLQTEDVQLALFSPEDVALDPVALCQHLALIAKDYGALIYESNPVLEVHIGDE 200
Query: 402 K-VSGVETTNGAIECDYFINCAGFWA--RQVGQLARPQVKVPLLPCEHYYLHTKPI 560
K V GV T G IE +F++ AG WA V L V+ PC + Y+HT +
Sbjct: 201 KQVYGVSTKMGFIETSHFVDAAGIWAGSHLVKALPHQHVQTAAYPCTYSYIHTSKL 256
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 52.4 bits (120), Expect = 2e-07
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 8/193 (4%)
Frame = +3
Query: 3 GLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMTVYRRMKSQ 179
GLV A P + SI L +LEA G ++ G++ LA R+ +R+ ++
Sbjct: 75 GLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLAEFRKYVNR 134
Query: 180 SVSWSID-CD--LVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKG 350
D C L+TP + EL P ++ +LG L DG L +L+ A + G
Sbjct: 135 DYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQALVVGAKNGG 194
Query: 351 VGVMEDCSVTAVLSKDDKVSG---VETTNGA-IECDYFINCAGFWARQVGQLARPQVKVP 518
V++ + K DK G + +G + IN G WA + +L+ +P
Sbjct: 195 AQVIDGAIPKEI--KYDKEKGHWIIALEDGTLVTTRNLINAGGIWANDIARLSGH--ALP 250
Query: 519 LLPCEHYYLHTKP 557
++ EH Y P
Sbjct: 251 VVVVEHQYAVLTP 263
>AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical
protein Y37E3.17b protein.
Length = 837
Score = 52.4 bits (120), Expect = 2e-07
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 8/193 (4%)
Frame = +3
Query: 3 GLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMTVYRRMKSQ 179
GLV A P + SI L +LEA G ++ G++ LA R+ +R+ ++
Sbjct: 82 GLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLAEFRKYVNR 141
Query: 180 SVSWSID-CD--LVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKG 350
D C L+TP + EL P ++ +LG L DG L +L+ A + G
Sbjct: 142 DYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQALVVGAKNGG 201
Query: 351 VGVMEDCSVTAVLSKDDKVSG---VETTNGA-IECDYFINCAGFWARQVGQLARPQVKVP 518
V++ + K DK G + +G + IN G WA + +L+ +P
Sbjct: 202 AQVIDGAIPKEI--KYDKEKGHWIIALEDGTLVTTRNLINAGGIWANDIARLSGH--ALP 257
Query: 519 LLPCEHYYLHTKP 557
++ EH Y P
Sbjct: 258 VVVVEHQYAVLTP 270
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 35.9 bits (79), Expect = 0.020
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -2
Query: 487 PTCLAQKPAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSK 308
PT + P+ ++ + VV+ P T+ + STAVT+ S++ P +V ++ + +K
Sbjct: 293 PTTVVTIPSTVVTSPITTPSTVVTVPSTVVTVPSTAVTKPSTVVTAPSTVVTVPSTVVTK 352
Query: 307 CGS-PTPSPGIHRPPSTSST 251
+ T SP + P+T T
Sbjct: 353 PNTVVTSSPTVATTPTTVVT 372
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 32.7 bits (71), Expect = 0.19
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = -2
Query: 526 GSKGTFTCGRANCPTCLAQKPAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPT- 350
G +G F C R C + L Q + + SI +S P T+ S + T S+ITPT
Sbjct: 126 GQRGRFFC-RNKCDSGLEQDGSATSTSTTSITTSTLSPPSTVQSTTTAKPTTTSTITPTT 184
Query: 349 ---PLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 230
P S + S S P ST ++ ++ +S
Sbjct: 185 SADPTSTITTSTTPNPSSPSTVQSTTTAEPTSTITSTTVPESS 227
>U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical
protein C15B12.8 protein.
Length = 385
Score = 32.3 bits (70), Expect = 0.25
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 1/165 (0%)
Frame = +3
Query: 39 VRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTP 218
V L S ++ELE + W + G L A ++ +K + ID +++
Sbjct: 63 VPLVGDSYLQIEELEKKRGEKLWNKLGLLWAATGNQVDSISGHLKKHN----IDHEVLPG 118
Query: 219 KKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKD 398
K E +P +D L P GV + + E G + ++ V + D
Sbjct: 119 TKITERYPQFKFDDKWTALIDPMGGVIYANKWLKAFQEEFITLGGTIQDNEPVISYGETD 178
Query: 399 DKVSGVETTNGAIECDYFINCAGFWARQVGQLARPQVK-VPLLPC 530
+ + V+T+ G + + I G W + Q+K + L C
Sbjct: 179 NVIVNVKTSTGEYKTNKIIFTVGCWITKFFPNVNFQIKPISLAVC 223
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 301 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 212
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 52 APMPSQKILPPPTTSAPSNSGNNSINYMGV 81
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 301 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 212
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 113 APMPSQKILPPPTTSAPSNSGNNSINYMGV 142
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 301 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 212
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 77 APMPSQKILPPPTTSAPSNSGNNSINYMGV 106
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 30.7 bits (66), Expect = 0.76
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 430 PFVVSTPDTLSSFDS--TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 257
P + P T FD T + E+ + + +P AS RD+ +PTP+ I+RP S+
Sbjct: 554 PDELGLPTTSIQFDDRLTVIVEEDTPSDSPAPDASP-RDLPE---TPTPTSPIYRPLSSL 609
Query: 256 STFS 245
S+FS
Sbjct: 610 SSFS 613
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 30.7 bits (66), Expect = 0.76
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 430 PFVVSTPDTLSSFDS--TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 257
P + P T FD T + E+ + + +P AS RD+ +PTP+ I+RP S+
Sbjct: 554 PDELGLPTTSIQFDDRLTVIVEEDTPSDSPAPDASP-RDLPE---TPTPTSPIYRPLSSL 609
Query: 256 STFS 245
S+FS
Sbjct: 610 SSFS 613
>AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical
protein Y64G10A.11 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 296 RRPAFALYVSYERSN**RCGCDGRLFCDSCAIERRQSVWSGNYKWCNR 439
+ P Y Y RS + GC+G+ SCA+ + ++++ YK NR
Sbjct: 19 KEPCVQAYTKYVRSR--KPGCNGKF--QSCAVRQPKTIYFHTYKKVNR 62
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -2
Query: 415 TPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGN 236
TP + DS + S+ P+ ++ I K TPSP + + PS+SS+ S +
Sbjct: 333 TPKRPQTNDSVSTRRSSTTWEVPIRPTTMNSQISRK---RTPSPVVRKAPSSSSSNSTSS 389
Query: 235 NS 230
+S
Sbjct: 390 SS 391
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -2
Query: 406 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 239
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 238 NNS*HF-FGVTKSQSMLHDT 182
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -2
Query: 445 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 266
S S +TP + S+ S++ + SS +P P + ++ S+ SP+ +P P
Sbjct: 573 SQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPT 632
Query: 265 STSST 251
+S +
Sbjct: 633 GSSQS 637
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -2
Query: 406 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 239
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 238 NNS*HF-FGVTKSQSMLHDT 182
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -2
Query: 445 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 266
S S +TP + S+ S++ + SS +P P + ++ S+ SP+ +P P
Sbjct: 573 SQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPT 632
Query: 265 STSST 251
+S +
Sbjct: 633 GSSQS 637
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = -2
Query: 424 VVSTPDTLSSFDSTAVTEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 254
V + P T ++ ST+ ++ TP T + + + S SPT SP P+T++
Sbjct: 279 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTA 338
Query: 253 TF---SIGNNS*HFFGVTKSQSMLHDT 182
T ++ N S G+ ++L++T
Sbjct: 339 TVLAPTLKNLSDSGVGINNVSTVLNET 365
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = -2
Query: 424 VVSTPDTLSSFDSTAVTEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 254
V + P T ++ ST+ ++ TP T + + + S SPT SP P+T++
Sbjct: 261 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTA 320
Query: 253 TF---SIGNNS*HFFGVTKSQSMLHDT 182
T ++ N S G+ ++L++T
Sbjct: 321 TVLAPTLKNLSDSGVGINNVSTVLNET 347
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -2
Query: 424 VVSTPDTLSSFDSTAVTEQSSIT-PTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 248
V P + + A EQ+ + P P VA+ D++ CGS P+P P +T S +
Sbjct: 230 VTPAPAAAAPAPADAPVEQAPVAVPAPAPVAA--PDVE--CGSAAPAPAAAAPAATDSGY 285
Query: 247 SIGNNS 230
NS
Sbjct: 286 RSKRNS 291
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2
Query: 415 TPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 248
TP T S+ + ++ E+ PT + AS + + PTPS I +PP T++ F
Sbjct: 16 TPTTSSNIELHSINEE----PTTVHPASS-ENSEDVPADPTPSSSISQPPPTTTLF 66
>Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical
protein M04B2.4 protein.
Length = 527
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 117 GSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDV-LGGLWIPGDG 293
G L LA+T + + + R + L++ + + +P +NV+DV L L + +G
Sbjct: 187 GYLRLAKTDEEVEMMRSAWKVQIERGAKVQLLSKDELTKRYPYMNVDDVLLASLGVENEG 246
Query: 294 VGDPHLLCMSLMRE 335
D L +S +RE
Sbjct: 247 TIDTWQL-LSAIRE 259
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -2
Query: 445 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 266
S ++ P V +P +S + A ++ + T + + S + D S GS P P P
Sbjct: 22 SSTVIPSTVPSPTGDTSQVTGASSDSTGSTGSSAAPGSTVTD-GSNTGSTAPVPSTTPTP 80
Query: 265 STSSTFSIGNN 233
STF + N+
Sbjct: 81 MKFSTFPVSND 91
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 162 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 266
++MKS + S SID L +P C P+ N EDV+
Sbjct: 127 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 159
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 162 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 266
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 162 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 266
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 162 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 266
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -2
Query: 445 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 266
S S +P T T + ST SS TP+ + +S+ S S +
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTK 539
Query: 265 STSSTFSIGNNS*HFFGVTKSQSMLHDT 182
S ++T S G N F+ V K+ + +D+
Sbjct: 540 SETTTSSDGTNP-DFYFVEKATTTFYDS 566
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -2
Query: 445 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 266
S S +P T T + ST SS TP+ + +S+ S S +
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTK 539
Query: 265 STSSTFSIGNNS*HFFGVTKSQSMLHDT 182
S ++T S G N F+ V K+ + +D+
Sbjct: 540 SETTTSSDGTNP-DFYFVEKATTTFYDS 566
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 4.0
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -2
Query: 388 STAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS*HF 221
STAVT SS+ +P P S+++ I S S +PS P S+ +I ++S F
Sbjct: 20 STAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTF 79
Query: 220 -FGVTKSQSMLHDT 182
V S S + T
Sbjct: 80 PSSVASSPSTVGST 93
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -2
Query: 445 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 266
S S +TP + S+ S++ + SS +P P + ++ S+ SP+ +P P
Sbjct: 366 SQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPT 425
Query: 265 STSST 251
+S +
Sbjct: 426 GSSQS 430
>AL023856-2|CAA19567.1| 327|Caenorhabditis elegans Hypothetical
protein Y94A7B.5 protein.
Length = 327
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 427 MVQSSVITLSTVRAFGLD-RSDSWHDRR*KYPY----YHVNITICIPSPL 561
+V S+I + R F L R+DSW R +YP+ Y + IT+CIP+ L
Sbjct: 104 LVPISIILMFENRYFILFVRNDSW--RYLRYPFLIINYIIGITVCIPAYL 151
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = -2
Query: 424 VVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 257
++S P SS + + Q+ P+P + + + ++ +P P+P H S+S
Sbjct: 472 ILSAPTPASSDYDSMTSSQNRRNPSPATAIDDLLGLGTETSAPAPAPSTHFNNSSS 527
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = -2
Query: 424 VVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 257
++S P SS + + Q+ P+P + + + ++ +P P+P H S+S
Sbjct: 472 ILSAPTPASSDYDSMTSSQNRRNPSPATAIDDLLGLGTETSAPAPAPSTHFNNSSS 527
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 415 WKLQMVQSSVITLSTVRAFGLDRSDSWH 498
++LQM +V T S RAFG D+ D+++
Sbjct: 244 YELQMASEAVETNSLTRAFGWDKLDAFN 271
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 415 WKLQMVQSSVITLSTVRAFGLDRSDSWH 498
++LQM +V T S RAFG D+ D+++
Sbjct: 244 YELQMASEAVETNSLTRAFGWDKLDAFN 271
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 415 WKLQMVQSSVITLSTVRAFGLDRSDSWH 498
++LQM +V T S RAFG D+ D+++
Sbjct: 244 YELQMASEAVETNSLTRAFGWDKLDAFN 271
>Z98877-1|CAB11569.2| 343|Caenorhabditis elegans Hypothetical
protein Y69H2.1 protein.
Length = 343
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 195 CSTIQTDFSFFCKQSCGLLFLPIIVNHI 112
CS ++ F C QS GL+ +PI ++HI
Sbjct: 122 CSLLR-HFVLACFQSAGLITVPIAIDHI 148
>U70854-14|AAB09153.1| 81|Caenorhabditis elegans Nematode specific
peptide family,group b protein 5 protein.
Length = 81
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 192 STIQTDFSFFCKQSCGLLFLPII 124
STI F+ FC SC +L+ P++
Sbjct: 5 STIVMIFALFCISSCQVLYTPVV 27
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = -2
Query: 421 VSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSI 242
V+ P + SS STA SSI P +AS + S GS +P P + SST +
Sbjct: 1470 VTVPPSSSSIGSTAPQGSSSIQP----IAS-SSTMGSTAGSSSPQPTVSSTSVPSSTGAT 1524
Query: 241 GNNS 230
+ S
Sbjct: 1525 SSGS 1528
>U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform c protein.
Length = 417
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 403 LSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 251
+S ++ + I P+P + SL+ S TP +RPP S T
Sbjct: 230 ISGASNSGLLSSPLIAPSPTLLQSLMNTPTQPTASLTPKKAENRPPVVSQT 280
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 411 QTLCRLSIA-QLSQNNLPSHPHLYQLLL 331
+ L RL +A QLSQ +HP+ QLLL
Sbjct: 289 EKLARLKLAIQLSQKRFVAHPNCQQLLL 316
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 411 QTLCRLSIA-QLSQNNLPSHPHLYQLLL 331
+ L RL +A QLSQ +HP+ QLLL
Sbjct: 289 EKLARLKLAIQLSQKRFVAHPNCQQLLL 316
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 411 QTLCRLSIA-QLSQNNLPSHPHLYQLLL 331
+ L RL +A QLSQ +HP+ QLLL
Sbjct: 289 EKLARLKLAIQLSQKRFVAHPNCQQLLL 316
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 388 STAVTEQSSITPTPLSVASLIRDIQSK-CGSPTPSPGIHRPPSTSS 254
S A S++ P PL S I I S GS +P +P +TSS
Sbjct: 185 SGAAGVNSALQPKPLPPLSSITSISSSAAGSSISAPSTSQPSTTSS 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,128,848
Number of Sequences: 27780
Number of extensions: 310643
Number of successful extensions: 1098
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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