Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0829
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48440.2 68418.m05990 FAD-dependent oxidoreductase family pro... 33 0.13
At5g48440.1 68418.m05989 FAD-dependent oxidoreductase family pro... 33 0.13
At5g34358.1 68418.m04025 hypothetical protein 32 0.30
At1g63600.1 68414.m07189 protein kinase-related low similarity t... 31 0.53
At1g12170.1 68414.m01409 F-box family protein contains F-box dom... 29 1.6
At5g63750.1 68418.m08001 IBR domain-containing protein contains ... 29 2.8
At5g62570.1 68418.m07852 calmodulin-binding protein similar to c... 28 3.7
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 28 3.7
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 28 3.7
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 28 5.0
At3g12570.3 68416.m01566 expressed protein 28 5.0
At3g12570.2 68416.m01565 expressed protein 28 5.0
At3g12570.1 68416.m01564 expressed protein 28 5.0
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 28 5.0
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 6.5
At4g01640.1 68417.m00213 hypothetical protein 27 6.5
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con... 27 6.5
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 27 6.5
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 27 8.7
At1g06040.1 68414.m00632 zinc finger (B-box type) family protein... 27 8.7
>At5g48440.2 68418.m05990 FAD-dependent oxidoreductase family
protein low similarity to hydrogen cyanide synthase HcnC
from Pseudomonas fluorescens [GI:3220203]; contains Pfam
profile PF01266 FAD dependent oxidoreductase
Length = 333
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +3
Query: 102 GWKQCGSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGGLWI 281
GWK+ GSLL+ RT + ++ + + + ++ + P + V D G ++
Sbjct: 40 GWKKTGSLLIGRTTEECVALKQKVHELSEAGLRTEYLSSAELLLKEPAILVNDNTGAAFL 99
Query: 282 PGDGVGDPH 308
P D D H
Sbjct: 100 PDDSQLDAH 108
>At5g48440.1 68418.m05989 FAD-dependent oxidoreductase family
protein low similarity to hydrogen cyanide synthase HcnC
from Pseudomonas fluorescens [GI:3220203]; contains Pfam
profile PF01266 FAD dependent oxidoreductase
Length = 367
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +3
Query: 102 GWKQCGSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGGLWI 281
GWK+ GSLL+ RT + ++ + + + ++ + P + V D G ++
Sbjct: 40 GWKKTGSLLIGRTTEECVALKQKVHELSEAGLRTEYLSSAELLLKEPAILVNDNTGAAFL 99
Query: 282 PGDGVGDPH 308
P D D H
Sbjct: 100 PDDSQLDAH 108
>At5g34358.1 68418.m04025 hypothetical protein
Length = 116
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 340 VASLIRDIQSKCGSPTPSPGIHRPPSTSST 251
+A+ I+D QSK P+P P + R STSST
Sbjct: 1 MAAQIKDFQSKPRPPSPIPKVRRSGSTSST 30
>At1g63600.1 68414.m07189 protein kinase-related low similarity to
receptor-like protein kinase 5 [Arabidopsis thaliana]
GI:13506747; contains Pfam profile: PF01657 Domain of
unknown function DUF26
Length = 302
Score = 31.1 bits (67), Expect = 0.53
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -2
Query: 493 NCPTCLAQKPAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQ 314
NC TCL ++++ + + TP L +++TA++ P+P +S +
Sbjct: 215 NCTTCLKLAVQEMLECCNQSRWAQIFTPKCLLRYEATALSSPPPPYPSPPPPSSPL---- 270
Query: 313 SKCGSP-TPSPGIHRPPSTSSTFSIGNNS 230
SP PSP + + P T+S FS G++S
Sbjct: 271 ---FSPLLPSPPLFKRPQTASGFS-GSSS 295
>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 356 CDGRLFCDSCAIERRQSVWS 415
CDG LFCDS + ++ ++W+
Sbjct: 98 CDGLLFCDSWSWRKKAAIWN 117
>At5g63750.1 68418.m08001 IBR domain-containing protein contains a
Prosite:PS00518 Zinc finger, C3HC4 type (RING finger),
signature and Pfam:PF01485 IBR domain
Length = 536
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 293 CRRPAFALYVSYERSN**RCGCDGRLFCDSCAI-ERRQSVWSGNYKWCN 436
C RPA Y R C C+GR FC C E SG YK+CN
Sbjct: 280 CLRPADLGTKQYLRFL--TCACNGR-FCWKCMQPEEAHKTESGFYKFCN 325
>At5g62570.1 68418.m07852 calmodulin-binding protein similar to
calmodulin-binding protein TCB60 GI:1698548 from
[Nicotiana tabacum]
Length = 487
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 115 HCFHPVGLPRASSSLRSLIEDWASLT*ASVGLNAPTR 5
+C H +GL S L+S ++D+ S ASVG A ++
Sbjct: 428 NCSHILGLEEPQSELQSALDDFMSQKNASVGGKAHSK 464
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 28.3 bits (60), Expect = 3.7
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = +3
Query: 207 LVTPKKCHELFPMLNVEDVL--GGLWIPGD--GVGDP-HLLCMSLMR--EATDKGVGVME 365
L T + C EL LN++ ++ GG + D + P HLL + R + T KGV V++
Sbjct: 206 LQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLK 265
Query: 366 DCSVTAVLSKDDKVSGVE 419
DC++ V+ + DK+ E
Sbjct: 266 DCAM-LVMDEADKLLSAE 282
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 28.3 bits (60), Expect = 3.7
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = +3
Query: 207 LVTPKKCHELFPMLNVEDVL--GGLWIPGD--GVGDP-HLLCMSLMR--EATDKGVGVME 365
L T + C EL LN++ ++ GG + D + P HLL + R + T KGV V++
Sbjct: 206 LQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLK 265
Query: 366 DCSVTAVLSKDDKVSGVE 419
DC++ V+ + DK+ E
Sbjct: 266 DCAM-LVMDEADKLLSAE 282
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 69 LKELEARGRPTGWKQCGSLLLARTRDR 149
L++L+A + TGW GS ++ T+DR
Sbjct: 322 LEQLDAMAKETGWFGYGSRIIITTQDR 348
>At3g12570.3 68416.m01566 expressed protein
Length = 489
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +2
Query: 98 HRVETMWFTIIGKNKRPHDCL--------QKNEKSVCIVEHRL*LSYTKEMS*IISN 244
H V+T+ + G NKR DCL +EKS+ + H L ++ + S ++ N
Sbjct: 300 HAVDTVEVQLAGSNKRKRDCLALGNCDDSSSSEKSLDMKIHATELPWSNDFSGVMKN 356
>At3g12570.2 68416.m01565 expressed protein
Length = 489
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +2
Query: 98 HRVETMWFTIIGKNKRPHDCL--------QKNEKSVCIVEHRL*LSYTKEMS*IISN 244
H V+T+ + G NKR DCL +EKS+ + H L ++ + S ++ N
Sbjct: 300 HAVDTVEVQLAGSNKRKRDCLALGNCDDSSSSEKSLDMKIHATELPWSNDFSGVMKN 356
>At3g12570.1 68416.m01564 expressed protein
Length = 489
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +2
Query: 98 HRVETMWFTIIGKNKRPHDCL--------QKNEKSVCIVEHRL*LSYTKEMS*IISN 244
H V+T+ + G NKR DCL +EKS+ + H L ++ + S ++ N
Sbjct: 300 HAVDTVEVQLAGSNKRKRDCLALGNCDDSSSSEKSLDMKIHATELPWSNDFSGVMKN 356
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 27.9 bits (59), Expect = 5.0
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -2
Query: 445 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITP--TPLSVASLIRDIQSKCGSPTPSPGIHR 272
SHS P S+P T S S AV+ S + +P+ S + SP+PSP
Sbjct: 173 SHSSPPVSHSSPPTSRS--SPAVSHSSPVVAASSPVKAVSSSTASSPRAASPSPSPS--- 227
Query: 271 PPSTSST 251
PS SS+
Sbjct: 228 -PSISSS 233
>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 327
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = -2
Query: 535 CSHGSKGT----FTCGRANCPTCLAQKPAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQ 368
CSH + + R+ CP C A P + +S+ PF+ P D VT +
Sbjct: 147 CSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFI--RPHDNQDMDLENVTAR 204
Query: 367 SSITPTP 347
S+ +P
Sbjct: 205 RSVLESP 211
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.5 bits (58), Expect = 6.5
Identities = 22/76 (28%), Positives = 30/76 (39%)
Frame = -2
Query: 481 CLAQKPAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCG 302
CL +PAQ + A F P SF T + P+P + S S
Sbjct: 371 CLPARPAQ--RSPGQCAAFSSLPPVDCGSFGCGRSTRPPVVVPSPPTTPSPGGSPPSPSI 428
Query: 301 SPTPSPGIHRPPSTSS 254
SP+P + PP+T S
Sbjct: 429 SPSPPITVPSPPTTPS 444
>At4g01640.1 68417.m00213 hypothetical protein
Length = 300
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 123 LLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGG 272
L++ DR+ V +M V WS+D D T K+ + + LN+ L G
Sbjct: 190 LIMCNLDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSI--DLNITSSLFG 237
>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
contains Pfam PF00646: F-box domain; contains weak hit
to TIGRFAM TIGR01640 : F-box protein interaction domain;
weakly similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 391
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 123 LLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGG 272
L++ DR+ V +M V WS+D D T K+ + + LN+ L G
Sbjct: 281 LIMCNLDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSI--DLNITSSLFG 328
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 27.5 bits (58), Expect = 6.5
Identities = 26/92 (28%), Positives = 35/92 (38%)
Frame = -2
Query: 463 AQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSP 284
A+L+ HS P P +T + S+ P PL A QS C +P P P
Sbjct: 445 ARLLHQPHSNTPQPRPIPQKALVQANTDIN--STALPRPLVTAEAPPLHQSSCKAPQPKP 502
Query: 283 GIHRPPSTSSTFSIGNNS*HFFGVTKSQSMLH 188
+P S T I + + VT LH
Sbjct: 503 ISQQPAVQSKTDIINSTALPRPSVTTEARPLH 534
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 60 IRLLKELEARGRPTGWKQCGSLLLAR 137
+RLL+ +R R T W+Q LLL +
Sbjct: 30 VRLLQSCSSRNRETLWRQTNGLLLKK 55
>At1g06040.1 68414.m00632 zinc finger (B-box type) family protein /
salt-tolerance protein (STO) identical to SP|Q96288
Salt-tolerance protein [Arabidopsis thaliana]; contains
Pfam profile PF00643: B-box zinc finger
Length = 248
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 429 GAIECDYFINCAGFWARQVGQLARPQVKVPLLPCEHY-YLHT-KPI 560
GA E D+F + GF+ Q+ A P +VP L H ++H+ KP+
Sbjct: 175 GAGELDWFSDM-GFFGDQINDKALPAAEVPELSVSHLGHVHSYKPM 219
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,137
Number of Sequences: 28952
Number of extensions: 289042
Number of successful extensions: 946
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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