Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0824
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)                36   0.038
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    31   0.82 
SB_36777| Best HMM Match : VWA (HMM E-Value=0)                         31   1.1  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         30   1.4  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6)              29   3.3  
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)                  29   3.3  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_43507| Best HMM Match : DUF35 (HMM E-Value=7.6)                     28   5.8  
SB_19226| Best HMM Match : I-set (HMM E-Value=0)                       28   5.8  
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             28   5.8  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 28   5.8  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                28   7.6  
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)                   28   7.6  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)              28   7.6  

>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
          Length = 623

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 167 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 295
           +S ++S    P PP IP + SPPG    PIPTQ   N HY  LPG +
Sbjct: 358 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 400


>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 167 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 295
           +S ++S    P PP IP + SPPG    PIPTQ   N HY  LPG +
Sbjct: 325 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 367


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 185 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPG 289
           P+G    P +P    PPGP P  TF + H+ Q  G
Sbjct: 898 PMGPMGDPGLPGPPGPPGP-PVSTFYHHHHHQHHG 931


>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1303

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 89   AYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 247
            +YF  Q    +   + + +Q   + ++   +  V TP P  +PN V  P P P
Sbjct: 1221 SYFRGQISCMQVYDKPLNAQQIVYARDICDNLQVSTPSPSLVPNPVPQPAPAP 1273


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 375 HPCP--CRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 500
           HPCP  C    +  T L P I  P C+  +  P H+ P+  +C+
Sbjct: 320 HPCPLPCFEECKPCTELLPKII-PECQHEQQVPCHIDPWEFKCS 362


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 370  TGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 507
            +G  +  ++T  P   + +QST P A  H RR ST  R+  +++ S
Sbjct: 1093 SGPVSLTSKTPGPVSLTTKQSTKPEAKKHKRRSSTPERSDSDSSVS 1138


>SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6)
          Length = 286

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 381 CPCRPYLRTRTVLCPPIYR--PRCRLSRTPPLHLSPYITQCNPLSSRLWYTPLLRPFCKK 554
           C  RP+   R    PP+    P  R     PLHL P  T     S+ L+ + L+RP+C  
Sbjct: 181 CLVRPWCSARVRSSPPLASLDPGVR-QEYGPLHLLPRWTLVFGKSTVLFTSCLVRPWCSA 239

Query: 555 ILRRFRP 575
            +R   P
Sbjct: 240 RVRSSPP 246


>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
          Length = 918

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 390 RPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 500
           +PYLRT TV  P +   + +L RT    L P    C+
Sbjct: 324 KPYLRTFTVADPKVQLYQAKLHRTASAPLGPQRISCS 360


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +2

Query: 74  QEVEHAYFAQQYPQQRPITEVIGSQ-NFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPT 250
           ++V+H    QQ    +P      SQ NF F Q + +  P     P  +  Q   P P PT
Sbjct: 117 EQVKHVQHLQQQIALQPQLNGYPSQINFSFPQTAAVTLPQQIQHPTQLSQQPQQPDPPPT 176


>SB_43507| Best HMM Match : DUF35 (HMM E-Value=7.6)
          Length = 326

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 488 HTMQPALVATLVHASVTPVLQEDTSPVSPVTDKEDDSR 601
           HTM+   + T    SV   +Q DT+ +SP + +E DSR
Sbjct: 96  HTMKQ--IITTYEKSVRCTVQRDTTDLSPCSHEEADSR 131


>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1500

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 387 CRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNP--LSSRLWYTPLLRP 542
           C PY  +  +L  P+  P       P  H  PY   C+P   S+R+   PL+ P
Sbjct: 181 CSPYYTSTRMLTVPLITPLPVFYLFPLSHQYPY-ANCSPYYTSTRMLTVPLITP 233


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 373 GTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSR 510
           G R  A+  Y  ARS  ++ +A  AA   R     AR+  +A+RSR
Sbjct: 236 GPRGRAS--YRSARSGRQRDSARKAAAGGRTADQGARSGDSASRSR 279


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 182 SPVGT-PQPPAIPNQVSPPGPIPTQTFTNQHYVQLP 286
           +P G  P PPA P  + PP P P  TF N   +  P
Sbjct: 192 APPGVLPPPPAPPGALIPPPPAP-PTFNNNQNMGYP 226


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +2

Query: 506 LVATLVHASVTPVLQEDTSPVSPVTDKEDDSRKDGPSPELENGGDRKGD 652
           LV  LV  S   +  +   P  P    E   +KD P P+   G  +K +
Sbjct: 156 LVIALVSISTAEMKSKTKKPAVPAKKSEGPMKKDEPKPKKSKGPIKKDE 204


>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = +3

Query: 342 HRIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLSSRLW 521
           H  +SM  +   P PC   L T  +L  P YRP   ++  P     P  T   P     W
Sbjct: 98  HAYRSMGTVPLVPSPCYRPLVTVPLLPSPGYRPMGTVALVPSSCYRPLGTV--PWVPSPW 155

Query: 522 YTPLL 536
           Y PL+
Sbjct: 156 YRPLV 160


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 423  PPIYRPRCRLSRTPPLHLSPYITQCNPLSSRLWYTPLLRP 542
            P  Y+P    S   P+ L PY T   P+SS  +  P   P
Sbjct: 887  PASYQPSAPSSMPAPVPLQPYNTPMPPISSTPYQAPPTLP 926


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/104 (25%), Positives = 34/104 (32%)
 Frame = +3

Query: 300  RNLAACPCRLSLIFHRIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLS 479
            R +  CPC     F+    M       C C+P     T    P   P+     T P +  
Sbjct: 3237 RVIKGCPCEPGGCFNNGTCMANATIPTCKCQPGYTGLTCKFKPFNPPQDTDPETEPWNFM 3296

Query: 480  PYITQCNPLSSRLWYTPLLRPFCKKILRRFRP*PIKKTIPEKMD 611
            P I     L S   +       CK+     +P P   TI E  D
Sbjct: 3297 PLILLLLGLLSLALFLA-----CKRRPEEAKPLPAHATIREYQD 3335


>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
          Length = 577

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 188 VGTPQPPAIPNQVSPPGPIPTQ 253
           +G+  PP +P +V  PGPI  Q
Sbjct: 49  MGSKGPPGVPGEVGKPGPIGYQ 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,523,234
Number of Sequences: 59808
Number of extensions: 375629
Number of successful extensions: 2010
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)