Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0823
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    28   1.2  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   3.8  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   8.7  

>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 296 PESSWKRKRQAQAKSIVSARKKNEGNANRHIGL 198
           PE  WK K+  Q   +V+     EG+A  H  L
Sbjct: 648 PELMWKWKKDGQPWLVVAEHNYGEGSAREHAAL 680


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 303  EQSRKLMEEKTPSASKEYCKRAQKK 229
            E+S K + E  P++ +EY +R QKK
Sbjct: 1524 EESWKRLIESCPASQREYMQRLQKK 1548


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 155 LKKCIFCKFIRILFLQI*LEYFTII*YNRGIPCILHSKNIM 33
           L +  + KF+ +++  +   +F I+  N  IP +L  KNI+
Sbjct: 334 LVRSYWIKFLFVMYAVVLAVFFGIMHQNGVIPAVLEVKNII 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,154
Number of Sequences: 5004
Number of extensions: 65887
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)