Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0823
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1084 - 24232968-24234779                                         29   5.2  
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    28   6.9  
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684...    28   6.9  
03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...    28   9.1  
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312...    28   9.1  

>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 357 HCW*SDSQND*DSIKYRKEQSRKLMEEKTPSASKEYCK 244
           H W +D+  + + IKY   +  +  +EK    SK YC+
Sbjct: 191 HWWTTDADLEAELIKYGPVKEVRFFDEKASGKSKGYCQ 228


>12_02_0995 +
           25104303-25104486,25105164-25105275,25106466-25106554,
           25106635-25106703,25106784-25106913,25107073-25107231,
           25107364-25107736,25108070-25108182,25108429-25108624,
           25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 332 MTKIQLNTEKSSPESSWKRKRQAQAKSIVSARKKNEG 222
           + +I+L  ++S+ E   KR R+ QAK   ++RK N+G
Sbjct: 453 LAEIELKAKRSAAEKE-KRIRKKQAKQKKNSRKNNKG 488


>07_03_0276 +
           16166528-16166796,16166824-16167291,16168048-16168414,
           16168565-16168587,16170094-16170385
          Length = 472

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -2

Query: 280 RENAKRKQRVL*ARAKKMKVTLIAILDCFDNS---HRLSTGRSIC*KNVFSVNLFVSYSC 110
           R+  KRK +V+ A +KK K+   + LDC D +   HR+        K   +V+  V Y  
Sbjct: 343 RQAVKRKSQVIAASSKKKKLDDTSCLDCDDPTRWGHRILDFEKAKSKVEVTVSGEVRYQA 402

Query: 109 KYN*SILP 86
            Y    LP
Sbjct: 403 HYTKCKLP 410


>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -1

Query: 653 ILFRVHTYKIHKTSK*YTTFSYRTNMFDKVRHWRINVFSNIQYISRHIIARVYI 492
           ++ R+H   +H+T   Y     +T ++DK+ H  IN     Q+ S H + +VYI
Sbjct: 218 VVNRLHKEFVHETLLNYGVHYDKTWIYDKIHH-EIN-----QFCSAHSLQQVYI 265


>02_05_1018 -
           33530834-33530926,33531036-33531098,33531193-33531236,
           33531973-33532118,33532262-33532281,33532365-33532500,
           33532585-33532804,33532905-33533085,33533495-33533518,
           33534127-33534341,33534425-33534705,33535987-33536210
          Length = 548

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 8   LYSIVIIKSLYSYCEEYRVSRGYIKLW*NTLIIFAGIGYE 127
           L SI++   LYSYC E+ +  G      N   IF+ IG++
Sbjct: 238 LISIILYTELYSYCVEFIILEGD-----NMTSIFSHIGFD 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,870
Number of Sequences: 37544
Number of extensions: 314139
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)