Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0823
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          29   3.0  
SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)                  29   5.3  
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)                     28   9.2  

>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 418 RWTSC--INCSICVYCIH*LMYDICMYMYTRAIICRDIYCMLLKTFILQCLTLS 573
           R  SC  ++C +   CI       C+ +  R + CR + C +L   I+ CL LS
Sbjct: 300 RVVSCRVVSCRVLSCCIV-----SCLVVLYRVVSCRVVSCRVLSCCIVSCLVLS 348


>SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 372 NKIKTHCW*SDSQND*DSIKYRKEQSRKLMEEKTPSASK 256
           NK+  H   +    D DS+K R+ + RK  EEKTPS +K
Sbjct: 341 NKVSKHA--TKPSGDSDSLKRRRGRPRK--EEKTPSDNK 375


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 525 YISAYYSTSV---HIHTYVIH*LMYTIHAYTTIYTGCPTVI 412
           Y SA + +S    H+HT +IH     IH + T+    PTVI
Sbjct: 2   YTSAVHRSSTNIHHLHTIIIHLHPTVIHLHPTVIFLHPTVI 42


>SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)
          Length = 408

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 311 TEKSSPESSWKRKRQAQAKSIVSARKKNEGNANRHI 204
           +E +SP  +W+  R    ++ +  R  NEG+ + H+
Sbjct: 134 SEPTSPPETWRTSRGMLVRNSLLMRTANEGHMDAHV 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,119,997
Number of Sequences: 59808
Number of extensions: 439077
Number of successful extensions: 1627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)