Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0823
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    28   6.1  
U42439-2|AAA83506.1|  162|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
 Frame = +1

Query: 145 HFFNKSIVL*IACDCYRNNPIWRLALPSFFLRALTILFACAWRFLFHELSG--LLFSVFN 318
           ++  + ++  ++ D   NN I++   P +F++ L I F CA R   +ELSG   + +V  
Sbjct: 209 YYHMQKLIAKLSPDIKVNNLIYQF-FPIYFVQMLYI-FTCAVRIFTYELSGHDSIEAVMQ 266

Query: 319 *ILVILRITLPTM 357
            + +I+   +PT+
Sbjct: 267 CVNMIVPYLIPTI 279


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 328 VILRITLPTMCFYFIL*ICKMLHYFAMRNNRWTSCINCSICVY 456
           +I +IT PT  FY    +   + +F ++ N  T  I CS  +Y
Sbjct: 247 LIYQITSPTFTFYIPAILILTVPFFDLKFNLPTGLIVCSFSIY 289


>U42439-2|AAA83506.1|  162|Caenorhabditis elegans Hypothetical
           protein F19C7.5 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +3

Query: 339 NHSTNNVFLFYFID-M*NVTLLRYEK*PLDILYKL*YMRVLYTLINV*HMYVYVHSCYNM 515
           N +   +FL++ I     VT+L     P D    + + +  Y  I +  ++V +   + +
Sbjct: 7   NWNLFEIFLYHLISSFLAVTVLFTTVFPFDFKPNITFSK--YENIFLIILWVVIFLLHFL 64

Query: 516 PRYIL--YVAENIYSPMPYFIKHICTIRECCVLFASFMY 626
           P Y    + A  + SP+  F  +IC IR C +L A++ Y
Sbjct: 65  PSYYSKWFPANYVISPVVSFSSNICCIRLCTIL-ANWRY 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,849
Number of Sequences: 27780
Number of extensions: 357013
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)